Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 RPS15-202ENST00000585665 467 ntTSL 3 BASIC17.05■□□□□ 0.32
CCDC39Q9UFE4 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC17.05■□□□□ 0.32
CCDC39Q9UFE4 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC17.05■□□□□ 0.32
CCDC39Q9UFE4 AP005019.2-201ENST00000615104 511 ntBASIC17.05■□□□□ 0.32
CCDC39Q9UFE4 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
CCDC39Q9UFE4 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC17.05■□□□□ 0.32
CCDC39Q9UFE4 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC39Q9UFE4 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
CCDC39Q9UFE4 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
CCDC39Q9UFE4 INE2-201ENST00000630399 1874 ntBASIC17.05■□□□□ 0.32
CCDC39Q9UFE4 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC39Q9UFE4 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC39Q9UFE4 SSTR3-201ENST00000610913 4100 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC39Q9UFE4 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC17.05■□□□□ 0.32
CCDC39Q9UFE4 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC17.05■□□□□ 0.32
CCDC39Q9UFE4 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC39Q9UFE4 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CCDC39Q9UFE4 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC39Q9UFE4 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
CCDC39Q9UFE4 PNPLA5-205ENST00000597664 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC39Q9UFE4 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC39Q9UFE4 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC39Q9UFE4 STK40-201ENST00000359297 4837 ntTSL 2 BASIC17.04■□□□□ 0.32
CCDC39Q9UFE4 NDRG4-221ENST00000563799 3014 ntAPPRIS ALT1 TSL 2 BASIC17.04■□□□□ 0.32
CCDC39Q9UFE4 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
CCDC39Q9UFE4 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC39Q9UFE4 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC39Q9UFE4 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC17.04■□□□□ 0.32
CCDC39Q9UFE4 B9D1-203ENST00000395615 805 ntTSL 3 BASIC17.04■□□□□ 0.32
CCDC39Q9UFE4 TSEN2-202ENST00000402228 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC39Q9UFE4 LSM5-207ENST00000410044 687 ntTSL 3 BASIC17.04■□□□□ 0.32
CCDC39Q9UFE4 KLF2P2-201ENST00000416807 1039 ntBASIC17.04■□□□□ 0.32
CCDC39Q9UFE4 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC39Q9UFE4 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
CCDC39Q9UFE4 CTBP2P3-201ENST00000585629 1255 ntBASIC17.04■□□□□ 0.32
CCDC39Q9UFE4 METTL26-214ENST00000614890 801 ntTSL 3 BASIC17.04■□□□□ 0.32
CCDC39Q9UFE4 AL603764.1-201ENST00000636452 321 ntBASIC17.04■□□□□ 0.32
CCDC39Q9UFE4 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
CCDC39Q9UFE4 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC17.04■□□□□ 0.32
CCDC39Q9UFE4 LRP8-203ENST00000354412 2553 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC39Q9UFE4 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC17.04■□□□□ 0.32
CCDC39Q9UFE4 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC39Q9UFE4 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC39Q9UFE4 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC39Q9UFE4 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC39Q9UFE4 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
CCDC39Q9UFE4 NDRG4-255ENST00000570248 3207 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
CCDC39Q9UFE4 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC39Q9UFE4 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC17.03■□□□□ 0.32
CCDC39Q9UFE4 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC17.03■□□□□ 0.32
CCDC39Q9UFE4 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC17.03■□□□□ 0.32
CCDC39Q9UFE4 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC39Q9UFE4 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC17.03■□□□□ 0.32
CCDC39Q9UFE4 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC39Q9UFE4 LIG1-203ENST00000536218 3179 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
CCDC39Q9UFE4 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC39Q9UFE4 ANO7-202ENST00000402430 2652 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
CCDC39Q9UFE4 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
CCDC39Q9UFE4 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC39Q9UFE4 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC39Q9UFE4 ACKR1-201ENST00000368121 1240 ntBASIC17.03■□□□□ 0.32
CCDC39Q9UFE4 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC39Q9UFE4 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
CCDC39Q9UFE4 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC17.03■□□□□ 0.32
CCDC39Q9UFE4 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC39Q9UFE4 DUX4L47-201ENST00000566374 394 ntBASIC17.03■□□□□ 0.32
CCDC39Q9UFE4 TP53TG3HP-202ENST00000569755 579 ntBASIC17.03■□□□□ 0.32
CCDC39Q9UFE4 WFDC1-204ENST00000613603 549 ntBASIC17.03■□□□□ 0.32
CCDC39Q9UFE4 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC17.03■□□□□ 0.32
CCDC39Q9UFE4 CU634019.7-201ENST00000624153 1185 ntBASIC17.03■□□□□ 0.32
CCDC39Q9UFE4 AC005252.2-201ENST00000624630 1141 ntBASIC17.03■□□□□ 0.32
CCDC39Q9UFE4 FP236241.2-201ENST00000624906 1185 ntBASIC17.03■□□□□ 0.32
CCDC39Q9UFE4 ARHGEF37-201ENST00000333677 4968 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
CCDC39Q9UFE4 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC39Q9UFE4 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC17.03■□□□□ 0.32
CCDC39Q9UFE4 AC114271.1-201ENST00000612689 2813 ntBASIC17.03■□□□□ 0.32
CCDC39Q9UFE4 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC17.03■□□□□ 0.32
CCDC39Q9UFE4 SPPL2B-209ENST00000613503 3456 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC39Q9UFE4 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC17.03■□□□□ 0.32
CCDC39Q9UFE4 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC17.03■□□□□ 0.32
CCDC39Q9UFE4 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC39Q9UFE4 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC39Q9UFE4 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC39Q9UFE4 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CCDC39Q9UFE4 AC018665.1-201ENST00000622927 1362 ntBASIC17.02■□□□□ 0.32
CCDC39Q9UFE4 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC39Q9UFE4 MROH2A-201ENST00000389758 5355 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
CCDC39Q9UFE4 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC17.02■□□□□ 0.32
CCDC39Q9UFE4 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC39Q9UFE4 SAFB-211ENST00000592224 3014 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC39Q9UFE4 SLC29A1-201ENST00000371708 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC39Q9UFE4 AC023794.5-201ENST00000564380 2157 ntBASIC17.02■□□□□ 0.32
CCDC39Q9UFE4 NFATC2-203ENST00000414705 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC39Q9UFE4 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC17.02■□□□□ 0.32
CCDC39Q9UFE4 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC39Q9UFE4 LRRC59-203ENST00000576448 1531 ntBASIC17.02■□□□□ 0.32
CCDC39Q9UFE4 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
CCDC39Q9UFE4 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CCDC39Q9UFE4 FUK-202ENST00000378912 3925 ntTSL 2 BASIC17.02■□□□□ 0.32
CCDC39Q9UFE4 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms