Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 UPF3AP3-201ENST00000420996 769 ntBASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 EIF3FP3-201ENST00000434851 1086 ntBASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 AC009477.1-201ENST00000452936 217 ntBASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 GCOM2-201ENST00000509133 1104 ntBASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 ARL16-202ENST00000570561 768 ntTSL 2 BASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 AL158211.3-201ENST00000607385 239 ntBASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 AP001002.3-201ENST00000623482 206 ntBASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 SMTN-201ENST00000333137 3295 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 OFD1-202ENST00000380550 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 DDC-207ENST00000444124 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 CCT8L2-201ENST00000359963 2060 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 ARHGEF4-217ENST00000611048 3486 ntTSL 5 BASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 C7orf65-201ENST00000408988 2911 ntTSL 2 BASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 ZNF721-205ENST00000511833 2966 ntAPPRIS P1 TSL 4 BASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 AL157996.1-201ENST00000624684 2299 ntBASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 TMEM25-201ENST00000313236 2409 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 ABCB9-203ENST00000346530 3399 ntTSL 5 BASIC14.3□□□□□ -0.12
CCDC28BQ9BUN5 PROKR1-201ENST00000303786 4273 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
CCDC28BQ9BUN5 DYNC1I2-203ENST00000409197 2572 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC28BQ9BUN5 DYNC1I2-206ENST00000409773 2583 ntTSL 2 BASIC14.29□□□□□ -0.12
CCDC28BQ9BUN5 CENPBD1-201ENST00000314994 2744 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
CCDC28BQ9BUN5 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC28BQ9BUN5 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
CCDC28BQ9BUN5 MDM1-201ENST00000303145 2918 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC28BQ9BUN5 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
CCDC28BQ9BUN5 AL139193.2-201ENST00000553712 1954 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC28BQ9BUN5 PP14571-202ENST00000404891 2017 ntTSL 2 BASIC14.29□□□□□ -0.12
CCDC28BQ9BUN5 MCM9-202ENST00000316316 5101 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
CCDC28BQ9BUN5 SLC38A1-204ENST00000546893 2332 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC28BQ9BUN5 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC28BQ9BUN5 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC28BQ9BUN5 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC14.29□□□□□ -0.12
CCDC28BQ9BUN5 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC28BQ9BUN5 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC14.29□□□□□ -0.12
CCDC28BQ9BUN5 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC14.29□□□□□ -0.12
CCDC28BQ9BUN5 AC107890.1-201ENST00000422478 521 ntBASIC14.29□□□□□ -0.12
CCDC28BQ9BUN5 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC14.29□□□□□ -0.12
CCDC28BQ9BUN5 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC14.29□□□□□ -0.12
CCDC28BQ9BUN5 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC28BQ9BUN5 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC14.29□□□□□ -0.12
CCDC28BQ9BUN5 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC14.29□□□□□ -0.12
CCDC28BQ9BUN5 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC14.29□□□□□ -0.12
CCDC28BQ9BUN5 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC28BQ9BUN5 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC14.29□□□□□ -0.12
CCDC28BQ9BUN5 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC14.29□□□□□ -0.12
CCDC28BQ9BUN5 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC14.29□□□□□ -0.12
CCDC28BQ9BUN5 SPDYE22P-201ENST00000582158 798 ntBASIC14.29□□□□□ -0.12
CCDC28BQ9BUN5 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC14.29□□□□□ -0.12
CCDC28BQ9BUN5 AC015911.4-201ENST00000588022 1070 ntBASIC14.29□□□□□ -0.12
CCDC28BQ9BUN5 BRI3BPP1-201ENST00000594224 787 ntBASIC14.29□□□□□ -0.12
CCDC28BQ9BUN5 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC14.29□□□□□ -0.12
CCDC28BQ9BUN5 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC28BQ9BUN5 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC28BQ9BUN5 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC28BQ9BUN5 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC28BQ9BUN5 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC14.29□□□□□ -0.12
CCDC28BQ9BUN5 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC28BQ9BUN5 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC28BQ9BUN5 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
CCDC28BQ9BUN5 AC139712.1-201ENST00000378256 1875 ntBASIC14.29□□□□□ -0.12
CCDC28BQ9BUN5 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC14.29□□□□□ -0.12
CCDC28BQ9BUN5 HCFC2-201ENST00000229330 5734 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC28BQ9BUN5 TCN2-202ENST00000405742 1936 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
CCDC28BQ9BUN5 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC14.29□□□□□ -0.12
CCDC28BQ9BUN5 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC28BQ9BUN5 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC28BQ9BUN5 FURIN-206ENST00000610579 4191 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
CCDC28BQ9BUN5 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
CCDC28BQ9BUN5 DNM2-204ENST00000408974 3013 ntAPPRIS ALT1 TSL 2 BASIC14.28□□□□□ -0.12
CCDC28BQ9BUN5 GIPR-205ENST00000590918 3289 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC28BQ9BUN5 SSTR3-201ENST00000610913 4100 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC28BQ9BUN5 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC28BQ9BUN5 DLL4-201ENST00000249749 3372 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC28BQ9BUN5 SYNE3-201ENST00000334258 3275 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC28BQ9BUN5 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
CCDC28BQ9BUN5 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC28BQ9BUN5 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC14.28□□□□□ -0.12
CCDC28BQ9BUN5 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC28BQ9BUN5 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC14.28□□□□□ -0.12
CCDC28BQ9BUN5 STK26-202ENST00000394334 3288 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC28BQ9BUN5 CCHCR1-203ENST00000396268 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC28BQ9BUN5 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC28BQ9BUN5 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms