Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC14.03□□□□□ -0.16
VPS13AQ96RL7 PITHD1-202ENST00000374524 1292 ntTSL 3 BASIC14.03□□□□□ -0.16
VPS13AQ96RL7 HYKK-201ENST00000388988 1235 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
VPS13AQ96RL7 TTTY18-201ENST00000438677 221 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
VPS13AQ96RL7 LINC02507-201ENST00000509370 1028 ntTSL 3 BASIC14.03□□□□□ -0.16
VPS13AQ96RL7 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC14.03□□□□□ -0.16
VPS13AQ96RL7 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
VPS13AQ96RL7 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
VPS13AQ96RL7 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC14.02□□□□□ -0.16
VPS13AQ96RL7 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
VPS13AQ96RL7 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
VPS13AQ96RL7 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
VPS13AQ96RL7 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
VPS13AQ96RL7 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
VPS13AQ96RL7 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
VPS13AQ96RL7 RN7SL672P-201ENST00000474091 317 ntBASIC14.02□□□□□ -0.16
VPS13AQ96RL7 AC005736.3-201ENST00000571169 244 ntTSL 5 BASIC14.02□□□□□ -0.16
VPS13AQ96RL7 SHBG-217ENST00000576478 639 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
VPS13AQ96RL7 SMAD7-208ENST00000591805 1152 ntTSL 2 BASIC14.02□□□□□ -0.16
VPS13AQ96RL7 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC14.02□□□□□ -0.16
VPS13AQ96RL7 AL162727.3-201ENST00000635661 2787 ntBASIC14.02□□□□□ -0.16
VPS13AQ96RL7 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
VPS13AQ96RL7 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.16
VPS13AQ96RL7 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
VPS13AQ96RL7 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC14.02□□□□□ -0.16
VPS13AQ96RL7 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC14.02□□□□□ -0.16
VPS13AQ96RL7 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
VPS13AQ96RL7 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
VPS13AQ96RL7 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC14.02□□□□□ -0.16
VPS13AQ96RL7 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC14.02□□□□□ -0.16
VPS13AQ96RL7 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
VPS13AQ96RL7 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
VPS13AQ96RL7 CRYM-202ENST00000543948 1400 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
VPS13AQ96RL7 RPSAP12-201ENST00000435879 888 ntBASIC14.02□□□□□ -0.17
VPS13AQ96RL7 AC116025.1-201ENST00000575404 415 ntTSL 3 BASIC14.02□□□□□ -0.17
VPS13AQ96RL7 SNORD3B-1-201ENST00000577988 758 ntBASIC14.02□□□□□ -0.17
VPS13AQ96RL7 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
VPS13AQ96RL7 AC126755.5-201ENST00000622756 267 ntBASIC14.02□□□□□ -0.17
VPS13AQ96RL7 AC093797.1-201ENST00000411847 1789 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
VPS13AQ96RL7 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
VPS13AQ96RL7 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC14.02□□□□□ -0.17
VPS13AQ96RL7 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
VPS13AQ96RL7 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
VPS13AQ96RL7 TBC1D3P2-201ENST00000339120 1513 ntTSL 2 BASIC14.02□□□□□ -0.17
VPS13AQ96RL7 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
VPS13AQ96RL7 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC14.02□□□□□ -0.17
VPS13AQ96RL7 FAM226B-201ENST00000602508 1490 ntBASIC14.02□□□□□ -0.17
VPS13AQ96RL7 TRMT11-202ENST00000368332 1889 ntAPPRIS ALT1 TSL 2 BASIC14.02□□□□□ -0.17
VPS13AQ96RL7 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
VPS13AQ96RL7 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC14.02□□□□□ -0.17
VPS13AQ96RL7 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
VPS13AQ96RL7 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
VPS13AQ96RL7 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
VPS13AQ96RL7 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
VPS13AQ96RL7 C12orf65-204ENST00000429587 1326 ntAPPRIS P2 TSL 2 BASIC14.02□□□□□ -0.17
VPS13AQ96RL7 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.17
VPS13AQ96RL7 GLRX2-202ENST00000367440 1131 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.17
VPS13AQ96RL7 HNRNPA1P10-201ENST00000444945 962 ntBASIC14.02□□□□□ -0.17
VPS13AQ96RL7 SNRPD2P2-201ENST00000473818 333 ntBASIC14.02□□□□□ -0.17
VPS13AQ96RL7 SNHG4-204ENST00000507197 865 ntTSL 2 BASIC14.02□□□□□ -0.17
VPS13AQ96RL7 SRP54-AS1-204ENST00000556705 580 ntTSL 2 BASIC14.02□□□□□ -0.17
VPS13AQ96RL7 AL807740.1-201ENST00000636971 567 ntTSL 4 BASIC14.02□□□□□ -0.17
VPS13AQ96RL7 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
VPS13AQ96RL7 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13AQ96RL7 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13AQ96RL7 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13AQ96RL7 TGM1-202ENST00000544573 1581 ntTSL 2 BASIC14.01□□□□□ -0.17
VPS13AQ96RL7 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13AQ96RL7 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC14.01□□□□□ -0.17
VPS13AQ96RL7 AC007952.5-201ENST00000572818 1486 ntBASIC14.01□□□□□ -0.17
VPS13AQ96RL7 GSN-209ENST00000449733 2702 ntTSL 2 BASIC14.01□□□□□ -0.17
VPS13AQ96RL7 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13AQ96RL7 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
VPS13AQ96RL7 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC14.01□□□□□ -0.17
VPS13AQ96RL7 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13AQ96RL7 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13AQ96RL7 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
VPS13AQ96RL7 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13AQ96RL7 AC026884.1-201ENST00000418296 457 ntBASIC14.01□□□□□ -0.17
VPS13AQ96RL7 AC027612.2-201ENST00000436174 1145 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13AQ96RL7 CRYBB2P1-204ENST00000509460 701 ntTSL 3 BASIC14.01□□□□□ -0.17
VPS13AQ96RL7 EEF1AKMT3-203ENST00000548256 561 ntTSL 4 BASIC14.01□□□□□ -0.17
VPS13AQ96RL7 URAHP-205ENST00000610227 398 ntBASIC14.01□□□□□ -0.17
VPS13AQ96RL7 AC245595.2-201ENST00000620141 1144 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13AQ96RL7 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13AQ96RL7 TPPP3-205ENST00000564104 1736 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13AQ96RL7 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13AQ96RL7 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13AQ96RL7 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13AQ96RL7 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
VPS13AQ96RL7 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13AQ96RL7 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13AQ96RL7 AC092135.3-201ENST00000624151 1846 ntBASIC14.01□□□□□ -0.17
VPS13AQ96RL7 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13AQ96RL7 PDCD6-201ENST00000264933 1135 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13AQ96RL7 NCR1-204ENST00000357397 594 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
VPS13AQ96RL7 AC103563.1-201ENST00000429316 123 ntBASIC14.01□□□□□ -0.17
VPS13AQ96RL7 TMEM14B-215ENST00000481240 1032 ntTSL 2 BASIC14.01□□□□□ -0.17
VPS13AQ96RL7 SCGB1A1-202ENST00000534397 466 ntTSL 3 BASIC14.01□□□□□ -0.17
VPS13AQ96RL7 AC002996.1-201ENST00000546840 784 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms