Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 NLRP2B-201ENST00000434992 3194 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 AL137783.1-201ENST00000623494 1896 ntBASIC4.58□□□□□ -1.68
SYNE1Q8NF91 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 GNPNAT1-201ENST00000216410 3860 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 SDCCAG3P2-201ENST00000326105 1023 ntBASIC4.58□□□□□ -1.68
SYNE1Q8NF91 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 AC005730.2-201ENST00000564549 1184 ntBASIC4.58□□□□□ -1.68
SYNE1Q8NF91 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 AC009336.2-201ENST00000468418 3521 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 DHX30-207ENST00000457607 3748 ntTSL 5 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 USP1-201ENST00000339950 3996 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 NCK2-206ENST00000522586 490 ntTSL 5 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 AC002472.3-201ENST00000640124 621 ntBASIC4.58□□□□□ -1.68
SYNE1Q8NF91 AC013726.1-201ENST00000563747 2285 ntBASIC4.58□□□□□ -1.68
SYNE1Q8NF91 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 CLUHP2-201ENST00000426660 1303 ntBASIC4.58□□□□□ -1.68
SYNE1Q8NF91 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 MSRA-203ENST00000441698 788 ntTSL 2 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 IRF6-204ENST00000542854 4256 ntTSL 2 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 UNC13D-201ENST00000207549 4393 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 LIG1-203ENST00000536218 3179 ntAPPRIS ALT2 TSL 2 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 HLA-DQB2-229ENST00000411527 1059 ntBASIC4.58□□□□□ -1.68
SYNE1Q8NF91 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 RPSAP36-202ENST00000494591 1261 ntBASIC4.58□□□□□ -1.68
SYNE1Q8NF91 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 FADS2-212ENST00000522639 360 ntTSL 5 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 FADS2-215ENST00000574708 385 ntTSL 3 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 CENPX-208ENST00000584347 799 ntTSL 2 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 ST6GAL1-215ENST00000457772 3947 ntTSL 5 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 HPCAL4-201ENST00000372844 4856 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 AC016245.1-201ENST00000570335 3204 ntTSL 2 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 ZNF747-202ENST00000395094 3504 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 MCL1-204ENST00000620947 3626 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC4.58□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms