Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC12.29□□□□□ -0.44
PDLIM3Q53GG5 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC12.29□□□□□ -0.44
PDLIM3Q53GG5 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC12.29□□□□□ -0.44
PDLIM3Q53GG5 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
PDLIM3Q53GG5 MADD-203ENST00000349238 5873 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
PDLIM3Q53GG5 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
PDLIM3Q53GG5 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC12.29□□□□□ -0.44
PDLIM3Q53GG5 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC12.29□□□□□ -0.44
PDLIM3Q53GG5 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC12.29□□□□□ -0.44
PDLIM3Q53GG5 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC12.29□□□□□ -0.44
PDLIM3Q53GG5 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
PDLIM3Q53GG5 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
PDLIM3Q53GG5 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
PDLIM3Q53GG5 AL080243.2-201ENST00000418783 582 ntBASIC12.29□□□□□ -0.44
PDLIM3Q53GG5 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC12.29□□□□□ -0.44
PDLIM3Q53GG5 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
PDLIM3Q53GG5 TPT1P11-201ENST00000458482 498 ntBASIC12.29□□□□□ -0.44
PDLIM3Q53GG5 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC12.29□□□□□ -0.44
PDLIM3Q53GG5 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC12.29□□□□□ -0.44
PDLIM3Q53GG5 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC12.29□□□□□ -0.44
PDLIM3Q53GG5 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC12.29□□□□□ -0.44
PDLIM3Q53GG5 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC12.29□□□□□ -0.44
PDLIM3Q53GG5 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC12.29□□□□□ -0.44
PDLIM3Q53GG5 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC12.29□□□□□ -0.44
PDLIM3Q53GG5 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC12.29□□□□□ -0.44
PDLIM3Q53GG5 AC010319.3-201ENST00000597028 470 ntBASIC12.29□□□□□ -0.44
PDLIM3Q53GG5 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC12.29□□□□□ -0.44
PDLIM3Q53GG5 AP001062.1-201ENST00000448927 4354 ntTSL 2 BASIC12.29□□□□□ -0.44
PDLIM3Q53GG5 AL122018.1-201ENST00000446607 2310 ntBASIC12.29□□□□□ -0.44
PDLIM3Q53GG5 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
PDLIM3Q53GG5 PPP1R15B-201ENST00000367188 5227 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
PDLIM3Q53GG5 COL6A1-201ENST00000361866 4238 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
PDLIM3Q53GG5 AMER2-201ENST00000357816 10055 ntTSL 2 BASIC12.29□□□□□ -0.44
PDLIM3Q53GG5 USP47-202ENST00000339865 7775 ntTSL 2 BASIC12.29□□□□□ -0.44
PDLIM3Q53GG5 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC12.29□□□□□ -0.44
PDLIM3Q53GG5 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC12.29□□□□□ -0.44
PDLIM3Q53GG5 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC12.29□□□□□ -0.44
PDLIM3Q53GG5 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
PDLIM3Q53GG5 LILRP1-201ENST00000444199 1370 ntBASIC12.29□□□□□ -0.44
PDLIM3Q53GG5 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC12.29□□□□□ -0.44
PDLIM3Q53GG5 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
PDLIM3Q53GG5 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC12.29□□□□□ -0.44
PDLIM3Q53GG5 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC12.29□□□□□ -0.44
PDLIM3Q53GG5 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
PDLIM3Q53GG5 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 FAM122B-202ENST00000343004 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 DLGAP1-201ENST00000315677 6683 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 RNF216-205ENST00000425013 5639 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 CILP2-201ENST00000291495 4199 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 CTR9-201ENST00000361367 4586 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 AL121723.1-201ENST00000445194 1519 ntBASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 PHLDB1-201ENST00000356063 5240 ntAPPRIS ALT2 TSL 2 BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 GNL1-201ENST00000376621 7490 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 MIR9-3HG-201ENST00000536780 4778 ntTSL 3 BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 KRT18P64-201ENST00000434946 1219 ntBASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 AC114501.2-201ENST00000439631 535 ntBASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 RPS2P36-201ENST00000456516 831 ntBASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 RAB35-202ENST00000534951 939 ntTSL 2 BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 RERG-205ENST00000537647 935 ntTSL 2 BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 SRD5A3P1-201ENST00000603021 949 ntBASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 AC000095.1-201ENST00000603208 874 ntBASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 SPCS2P2-201ENST00000603270 608 ntBASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 5S_rRNA.22-201ENST00000614916 106 ntBASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 MIR7845-201ENST00000618396 99 ntBASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 GPR39-203ENST00000622084 900 ntTSL 5 BASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 AL033527.5-202ENST00000641632 1098 ntBASIC12.28□□□□□ -0.44
PDLIM3Q53GG5 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms