Protein–RNA interactions for Protein: Q01581

HMGCS1, Hydroxymethylglutaryl-CoA synthase, cytoplasmic, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1Q01581 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
HMGCS1Q01581 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
HMGCS1Q01581 AP000593.2-201ENST00000542775 1433 ntBASIC14.15□□□□□ -0.14
HMGCS1Q01581 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HMGCS1Q01581 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HMGCS1Q01581 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
HMGCS1Q01581 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HMGCS1Q01581 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
HMGCS1Q01581 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
HMGCS1Q01581 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
HMGCS1Q01581 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
HMGCS1Q01581 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HMGCS1Q01581 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HMGCS1Q01581 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC14.15□□□□□ -0.14
HMGCS1Q01581 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
HMGCS1Q01581 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HMGCS1Q01581 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HMGCS1Q01581 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HMGCS1Q01581 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
HMGCS1Q01581 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HMGCS1Q01581 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
HMGCS1Q01581 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC14.15□□□□□ -0.14
HMGCS1Q01581 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
HMGCS1Q01581 AL590440.2-201ENST00000641973 1595 ntBASIC14.15□□□□□ -0.14
HMGCS1Q01581 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
HMGCS1Q01581 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC14.15□□□□□ -0.14
HMGCS1Q01581 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
HMGCS1Q01581 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC14.15□□□□□ -0.14
HMGCS1Q01581 AL355864.2-201ENST00000447420 863 ntBASIC14.15□□□□□ -0.14
HMGCS1Q01581 AL590640.2-201ENST00000457038 527 ntBASIC14.15□□□□□ -0.14
HMGCS1Q01581 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC14.15□□□□□ -0.14
HMGCS1Q01581 RN7SL837P-201ENST00000463010 287 ntBASIC14.15□□□□□ -0.14
HMGCS1Q01581 RN7SL752P-201ENST00000463779 287 ntBASIC14.15□□□□□ -0.14
HMGCS1Q01581 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC14.15□□□□□ -0.14
HMGCS1Q01581 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC14.15□□□□□ -0.14
HMGCS1Q01581 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
HMGCS1Q01581 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC14.15□□□□□ -0.14
HMGCS1Q01581 AC005225.4-201ENST00000557330 545 ntBASIC14.15□□□□□ -0.14
HMGCS1Q01581 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC14.15□□□□□ -0.14
HMGCS1Q01581 SRP9-204ENST00000619790 377 ntTSL 2 BASIC14.15□□□□□ -0.14
HMGCS1Q01581 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
HMGCS1Q01581 POLL-206ENST00000370172 2308 ntTSL 2 BASIC14.15□□□□□ -0.14
HMGCS1Q01581 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HMGCS1Q01581 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
HMGCS1Q01581 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
HMGCS1Q01581 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC14.15□□□□□ -0.14
HMGCS1Q01581 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
HMGCS1Q01581 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
HMGCS1Q01581 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC14.15□□□□□ -0.14
HMGCS1Q01581 HPD-204ENST00000543163 1709 ntTSL 5 BASIC14.15□□□□□ -0.14
HMGCS1Q01581 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
HMGCS1Q01581 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
HMGCS1Q01581 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
HMGCS1Q01581 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HMGCS1Q01581 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC14.15□□□□□ -0.14
HMGCS1Q01581 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HMGCS1Q01581 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC14.15□□□□□ -0.14
HMGCS1Q01581 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
HMGCS1Q01581 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HMGCS1Q01581 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC14.14□□□□□ -0.15
HMGCS1Q01581 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC14.14□□□□□ -0.15
HMGCS1Q01581 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
HMGCS1Q01581 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC14.14□□□□□ -0.15
HMGCS1Q01581 KRT8P24-201ENST00000560290 1559 ntBASIC14.14□□□□□ -0.15
HMGCS1Q01581 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC14.14□□□□□ -0.15
HMGCS1Q01581 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC14.14□□□□□ -0.15
HMGCS1Q01581 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
HMGCS1Q01581 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC14.14□□□□□ -0.15
HMGCS1Q01581 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC14.14□□□□□ -0.15
HMGCS1Q01581 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HMGCS1Q01581 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
HMGCS1Q01581 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC14.14□□□□□ -0.15
HMGCS1Q01581 MBLAC2-202ENST00000514906 1936 ntBASIC14.14□□□□□ -0.15
HMGCS1Q01581 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HMGCS1Q01581 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
HMGCS1Q01581 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC14.14□□□□□ -0.15
HMGCS1Q01581 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HMGCS1Q01581 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HMGCS1Q01581 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HMGCS1Q01581 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HMGCS1Q01581 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
HMGCS1Q01581 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
HMGCS1Q01581 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC14.14□□□□□ -0.15
HMGCS1Q01581 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HMGCS1Q01581 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC14.14□□□□□ -0.15
HMGCS1Q01581 GRAP-202ENST00000395635 834 ntTSL 2 BASIC14.14□□□□□ -0.15
HMGCS1Q01581 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HMGCS1Q01581 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
HMGCS1Q01581 PTPA-220ENST00000436883 532 ntTSL 4 BASIC14.14□□□□□ -0.15
HMGCS1Q01581 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC14.14□□□□□ -0.15
HMGCS1Q01581 PUDPP3-201ENST00000445368 636 ntBASIC14.14□□□□□ -0.15
HMGCS1Q01581 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC14.14□□□□□ -0.15
HMGCS1Q01581 NEU3-203ENST00000529024 581 ntTSL 3 BASIC14.14□□□□□ -0.15
HMGCS1Q01581 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC14.14□□□□□ -0.15
HMGCS1Q01581 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
HMGCS1Q01581 SORD2P-201ENST00000558556 1069 ntBASIC14.14□□□□□ -0.15
HMGCS1Q01581 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC14.14□□□□□ -0.15
HMGCS1Q01581 AC106820.3-201ENST00000561653 397 ntBASIC14.14□□□□□ -0.15
HMGCS1Q01581 AC025279.2-201ENST00000569730 653 ntBASIC14.14□□□□□ -0.15
HMGCS1Q01581 PIGL-212ENST00000581006 554 ntTSL 4 BASIC14.14□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms