Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
RNF4P78317 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC13.57□□□□□ -0.24
RNF4P78317 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC13.57□□□□□ -0.24
RNF4P78317 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
RNF4P78317 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
RNF4P78317 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RNF4P78317 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC13.57□□□□□ -0.24
RNF4P78317 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RNF4P78317 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
RNF4P78317 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
RNF4P78317 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RNF4P78317 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RNF4P78317 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RNF4P78317 MBLAC2-202ENST00000514906 1936 ntBASIC13.57□□□□□ -0.24
RNF4P78317 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC13.57□□□□□ -0.24
RNF4P78317 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
RNF4P78317 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RNF4P78317 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RNF4P78317 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RNF4P78317 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC13.57□□□□□ -0.24
RNF4P78317 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RNF4P78317 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RNF4P78317 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
RNF4P78317 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC13.57□□□□□ -0.24
RNF4P78317 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
RNF4P78317 CSH2-202ENST00000345366 598 ntTSL 5 BASIC13.57□□□□□ -0.24
RNF4P78317 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
RNF4P78317 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC13.57□□□□□ -0.24
RNF4P78317 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
RNF4P78317 NKAIN1P1-201ENST00000435754 582 ntBASIC13.57□□□□□ -0.24
RNF4P78317 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC13.57□□□□□ -0.24
RNF4P78317 AC104073.2-201ENST00000453737 312 ntBASIC13.57□□□□□ -0.24
RNF4P78317 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
RNF4P78317 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC13.57□□□□□ -0.24
RNF4P78317 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC13.57□□□□□ -0.24
RNF4P78317 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC13.57□□□□□ -0.24
RNF4P78317 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC13.57□□□□□ -0.24
RNF4P78317 RBM8B-201ENST00000555532 525 ntBASIC13.57□□□□□ -0.24
RNF4P78317 AL160314.3-201ENST00000556041 767 ntBASIC13.57□□□□□ -0.24
RNF4P78317 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC13.57□□□□□ -0.24
RNF4P78317 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC13.57□□□□□ -0.24
RNF4P78317 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
RNF4P78317 AC008805.1-201ENST00000590892 364 ntBASIC13.57□□□□□ -0.24
RNF4P78317 KC6-205ENST00000599934 556 ntTSL 4 BASIC13.57□□□□□ -0.24
RNF4P78317 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC13.57□□□□□ -0.24
RNF4P78317 MIR6787-201ENST00000616675 61 ntBASIC13.57□□□□□ -0.24
RNF4P78317 AL136295.7-201ENST00000619226 1200 ntBASIC13.57□□□□□ -0.24
RNF4P78317 AC244452.3-201ENST00000636814 210 ntBASIC13.57□□□□□ -0.24
RNF4P78317 AC068587.8-201ENST00000641239 219 ntBASIC13.57□□□□□ -0.24
RNF4P78317 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
RNF4P78317 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
RNF4P78317 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC13.57□□□□□ -0.24
RNF4P78317 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RNF4P78317 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC13.57□□□□□ -0.24
RNF4P78317 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC13.57□□□□□ -0.24
RNF4P78317 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
RNF4P78317 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC13.57□□□□□ -0.24
RNF4P78317 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC13.57□□□□□ -0.24
RNF4P78317 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
RNF4P78317 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC13.57□□□□□ -0.24
RNF4P78317 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC13.57□□□□□ -0.24
RNF4P78317 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC13.57□□□□□ -0.24
RNF4P78317 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC13.57□□□□□ -0.24
RNF4P78317 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC13.57□□□□□ -0.24
RNF4P78317 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
RNF4P78317 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RNF4P78317 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
RNF4P78317 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RNF4P78317 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RNF4P78317 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RNF4P78317 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
RNF4P78317 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
RNF4P78317 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
RNF4P78317 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC13.56□□□□□ -0.24
RNF4P78317 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
RNF4P78317 RALGAPA1-201ENST00000307138 7911 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RNF4P78317 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RNF4P78317 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
RNF4P78317 FAS-202ENST00000352159 1722 ntTSL 5 BASIC13.56□□□□□ -0.24
RNF4P78317 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RNF4P78317 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC13.56□□□□□ -0.24
RNF4P78317 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
RNF4P78317 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RNF4P78317 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
RNF4P78317 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RNF4P78317 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RNF4P78317 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
RNF4P78317 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
RNF4P78317 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RNF4P78317 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
RNF4P78317 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RNF4P78317 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
RNF4P78317 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
RNF4P78317 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RNF4P78317 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RNF4P78317 AGER-203ENST00000375065 665 ntTSL 2 BASIC13.56□□□□□ -0.24
RNF4P78317 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
RNF4P78317 TPT1P11-201ENST00000458482 498 ntBASIC13.56□□□□□ -0.24
RNF4P78317 ARTN-209ENST00000479128 471 ntTSL 3 BASIC13.56□□□□□ -0.24
RNF4P78317 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms