Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 CHRFAM7A-201ENST00000299847 6220 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLRN1P58418 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC13.14□□□□□ -0.31
CLRN1P58418 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
CLRN1P58418 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CLRN1P58418 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLRN1P58418 RALGAPA1-201ENST00000307138 7911 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLRN1P58418 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLRN1P58418 KDM2B-202ENST00000377071 4595 ntAPPRIS P4 TSL 1 (best) BASIC13.14□□□□□ -0.31
CLRN1P58418 AC009093.2-202ENST00000620513 2079 ntBASIC13.14□□□□□ -0.31
CLRN1P58418 MYLK-201ENST00000346322 5892 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
CLRN1P58418 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CLRN1P58418 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CLRN1P58418 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
CLRN1P58418 AC152010.1-201ENST00000415779 2006 ntBASIC13.13□□□□□ -0.31
CLRN1P58418 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CLRN1P58418 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
CLRN1P58418 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC13.13□□□□□ -0.31
CLRN1P58418 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
CLRN1P58418 C11orf87-201ENST00000327419 5884 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CLRN1P58418 ALX4-201ENST00000329255 5750 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CLRN1P58418 SGTB-201ENST00000381007 5469 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CLRN1P58418 NAPEPLD-201ENST00000341533 4972 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CLRN1P58418 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC13.13□□□□□ -0.31
CLRN1P58418 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CLRN1P58418 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CLRN1P58418 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
CLRN1P58418 F10-203ENST00000409306 1450 ntTSL 3 BASIC13.13□□□□□ -0.31
CLRN1P58418 WASHC2A-209ENST00000611324 4417 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
CLRN1P58418 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CLRN1P58418 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC13.13□□□□□ -0.31
CLRN1P58418 AC004945.1-201ENST00000416738 983 ntBASIC13.13□□□□□ -0.31
CLRN1P58418 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
CLRN1P58418 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC13.13□□□□□ -0.31
CLRN1P58418 CNN2P8-201ENST00000421872 913 ntBASIC13.13□□□□□ -0.31
CLRN1P58418 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC13.13□□□□□ -0.31
CLRN1P58418 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC13.13□□□□□ -0.31
CLRN1P58418 COX5BP1-201ENST00000507622 393 ntBASIC13.13□□□□□ -0.31
CLRN1P58418 ALG3P1-201ENST00000508806 1114 ntBASIC13.13□□□□□ -0.31
CLRN1P58418 CR383656.12-201ENST00000549567 513 ntBASIC13.13□□□□□ -0.31
CLRN1P58418 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC13.13□□□□□ -0.31
CLRN1P58418 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC13.13□□□□□ -0.31
CLRN1P58418 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC13.13□□□□□ -0.31
CLRN1P58418 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CLRN1P58418 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC13.13□□□□□ -0.31
CLRN1P58418 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC13.13□□□□□ -0.31
CLRN1P58418 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC13.13□□□□□ -0.31
CLRN1P58418 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC13.13□□□□□ -0.31
CLRN1P58418 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
CLRN1P58418 STAB1-201ENST00000321725 7928 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CLRN1P58418 NUP160-201ENST00000378460 5376 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
CLRN1P58418 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CLRN1P58418 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC13.13□□□□□ -0.31
CLRN1P58418 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
CLRN1P58418 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
CLRN1P58418 MTMR3-204ENST00000401950 6018 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
CLRN1P58418 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CLRN1P58418 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
CLRN1P58418 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC13.13□□□□□ -0.31
CLRN1P58418 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CLRN1P58418 GTF2I-215ENST00000614986 4415 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CLRN1P58418 GTF2I-221ENST00000621734 4412 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
CLRN1P58418 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC13.13□□□□□ -0.31
CLRN1P58418 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CLRN1P58418 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CLRN1P58418 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CLRN1P58418 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
CLRN1P58418 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC13.13□□□□□ -0.31
CLRN1P58418 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CLRN1P58418 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
CLRN1P58418 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC13.13□□□□□ -0.31
CLRN1P58418 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CLRN1P58418 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC13.13□□□□□ -0.31
CLRN1P58418 TRIM11-204ENST00000493030 5774 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CLRN1P58418 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CLRN1P58418 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLRN1P58418 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLRN1P58418 AC139712.1-201ENST00000378256 1875 ntBASIC13.12□□□□□ -0.31
CLRN1P58418 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CLRN1P58418 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLRN1P58418 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
CLRN1P58418 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLRN1P58418 TCOF1-207ENST00000504761 4467 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLRN1P58418 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLRN1P58418 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLRN1P58418 IGF2BP1-201ENST00000290341 8274 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLRN1P58418 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLRN1P58418 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLRN1P58418 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC13.12□□□□□ -0.31
CLRN1P58418 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
CLRN1P58418 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
CLRN1P58418 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CLRN1P58418 HIC2-203ENST00000443632 6940 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLRN1P58418 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC13.12□□□□□ -0.31
CLRN1P58418 KDM5C-208ENST00000452825 6096 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
CLRN1P58418 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLRN1P58418 HSPA7-201ENST00000445535 1927 ntBASIC13.12□□□□□ -0.31
CLRN1P58418 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC13.12□□□□□ -0.31
CLRN1P58418 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLRN1P58418 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC13.12□□□□□ -0.31
CLRN1P58418 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms