Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
CX3CR1P49238 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CR1P49238 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC12.93□□□□□ -0.34
CX3CR1P49238 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CR1P49238 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CR1P49238 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CR1P49238 CRYBG1-201ENST00000369066 7553 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CR1P49238 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CR1P49238 ANKRD11-203ENST00000378330 9132 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CR1P49238 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CR1P49238 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CR1P49238 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CR1P49238 MOB3C-203ENST00000371940 5725 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CR1P49238 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC12.93□□□□□ -0.34
CX3CR1P49238 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
CX3CR1P49238 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
CX3CR1P49238 NUDT3-201ENST00000607016 9905 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CR1P49238 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CR1P49238 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CR1P49238 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
CX3CR1P49238 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC12.93□□□□□ -0.34
CX3CR1P49238 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC12.93□□□□□ -0.34
CX3CR1P49238 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CR1P49238 FEM1A-201ENST00000269856 9593 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
CX3CR1P49238 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
CX3CR1P49238 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC12.93□□□□□ -0.34
CX3CR1P49238 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CR1P49238 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CR1P49238 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CR1P49238 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC12.93□□□□□ -0.34
CX3CR1P49238 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CR1P49238 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CR1P49238 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CR1P49238 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CR1P49238 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CR1P49238 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CR1P49238 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CR1P49238 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CR1P49238 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC12.93□□□□□ -0.34
CX3CR1P49238 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC12.93□□□□□ -0.34
CX3CR1P49238 CRB3P1-201ENST00000449338 276 ntBASIC12.93□□□□□ -0.34
CX3CR1P49238 FTLP10-202ENST00000505798 471 ntBASIC12.93□□□□□ -0.34
CX3CR1P49238 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC12.93□□□□□ -0.34
CX3CR1P49238 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC12.93□□□□□ -0.34
CX3CR1P49238 NEU3-203ENST00000529024 581 ntTSL 3 BASIC12.93□□□□□ -0.34
CX3CR1P49238 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC12.93□□□□□ -0.34
CX3CR1P49238 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC12.93□□□□□ -0.34
CX3CR1P49238 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CR1P49238 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC12.93□□□□□ -0.34
CX3CR1P49238 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC12.93□□□□□ -0.34
CX3CR1P49238 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CR1P49238 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
CX3CR1P49238 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CR1P49238 YIPF6-204ENST00000462683 6741 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CR1P49238 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CR1P49238 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
CX3CR1P49238 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CR1P49238 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CR1P49238 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CR1P49238 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CR1P49238 PPP5D1-201ENST00000414155 1882 ntAPPRIS P5 TSL 2 BASIC12.93□□□□□ -0.34
CX3CR1P49238 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC12.93□□□□□ -0.34
CX3CR1P49238 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC12.93□□□□□ -0.34
CX3CR1P49238 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CR1P49238 PTPRS-204ENST00000587303 6353 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CR1P49238 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
CX3CR1P49238 CCDC88A-204ENST00000413716 9586 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CR1P49238 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CR1P49238 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CR1P49238 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CR1P49238 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CX3CR1P49238 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC12.93□□□□□ -0.34
CX3CR1P49238 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC12.92□□□□□ -0.34
CX3CR1P49238 USP3-204ENST00000540797 5474 ntTSL 2 BASIC12.92□□□□□ -0.34
CX3CR1P49238 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CX3CR1P49238 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
CX3CR1P49238 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
CX3CR1P49238 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CX3CR1P49238 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CX3CR1P49238 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CX3CR1P49238 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
CX3CR1P49238 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC12.92□□□□□ -0.34
CX3CR1P49238 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CX3CR1P49238 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
CX3CR1P49238 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
CX3CR1P49238 LMBR1-201ENST00000353442 7997 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CX3CR1P49238 MEGF8-201ENST00000251268 9549 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
CX3CR1P49238 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CX3CR1P49238 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CX3CR1P49238 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
CX3CR1P49238 WARS-203ENST00000358655 2466 ntTSL 2 BASIC12.92□□□□□ -0.34
CX3CR1P49238 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CX3CR1P49238 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CX3CR1P49238 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
CX3CR1P49238 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CX3CR1P49238 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
CX3CR1P49238 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
CX3CR1P49238 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC12.92□□□□□ -0.34
CX3CR1P49238 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
CX3CR1P49238 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms