Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC12.98□□□□□ -0.33
SOX2P48431 KCNMA1-216ENST00000457953 3976 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
SOX2P48431 HSPA8P5-201ENST00000456928 2069 ntBASIC12.98□□□□□ -0.33
SOX2P48431 AC011840.2-201ENST00000563063 1520 ntBASIC12.98□□□□□ -0.33
SOX2P48431 DGCR8-201ENST00000351989 4514 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SOX2P48431 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
SOX2P48431 FFAR4-201ENST00000371481 3605 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
SOX2P48431 STRCP1-201ENST00000509801 5328 ntBASIC12.98□□□□□ -0.33
SOX2P48431 THAP2-201ENST00000308086 5719 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
SOX2P48431 CNTLN-201ENST00000380641 4871 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
SOX2P48431 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
SOX2P48431 PWWP2A-202ENST00000456329 3991 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
SOX2P48431 KLHL8-201ENST00000273963 5621 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
SOX2P48431 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC12.97□□□□□ -0.33
SOX2P48431 AC215219.1-201ENST00000400706 1817 ntBASIC12.97□□□□□ -0.33
SOX2P48431 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC12.97□□□□□ -0.33
SOX2P48431 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
SOX2P48431 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC12.97□□□□□ -0.33
SOX2P48431 SYK-203ENST00000375751 4936 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
SOX2P48431 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
SOX2P48431 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
SOX2P48431 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC12.97□□□□□ -0.33
SOX2P48431 AC108002.1-201ENST00000520572 5684 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
SOX2P48431 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
SOX2P48431 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
SOX2P48431 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
SOX2P48431 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC12.97□□□□□ -0.33
SOX2P48431 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
SOX2P48431 TSSK5P-201ENST00000423978 907 ntBASIC12.97□□□□□ -0.33
SOX2P48431 RASL12-203ENST00000434605 982 ntTSL 2 BASIC12.97□□□□□ -0.33
SOX2P48431 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC12.97□□□□□ -0.33
SOX2P48431 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC12.97□□□□□ -0.33
SOX2P48431 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC12.97□□□□□ -0.33
SOX2P48431 RN7SL399P-201ENST00000471648 279 ntBASIC12.97□□□□□ -0.33
SOX2P48431 AC067863.1-201ENST00000494933 530 ntBASIC12.97□□□□□ -0.33
SOX2P48431 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC12.97□□□□□ -0.33
SOX2P48431 AP001582.1-201ENST00000525856 295 ntBASIC12.97□□□□□ -0.33
SOX2P48431 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC12.97□□□□□ -0.33
SOX2P48431 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC12.97□□□□□ -0.33
SOX2P48431 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
SOX2P48431 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC12.97□□□□□ -0.33
SOX2P48431 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC12.97□□□□□ -0.33
SOX2P48431 ARL16-202ENST00000570561 768 ntTSL 2 BASIC12.97□□□□□ -0.33
SOX2P48431 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC12.97□□□□□ -0.33
SOX2P48431 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC12.97□□□□□ -0.33
SOX2P48431 AC092364.2-202ENST00000597012 1073 ntBASIC12.97□□□□□ -0.33
SOX2P48431 AC008738.7-201ENST00000609744 511 ntBASIC12.97□□□□□ -0.33
SOX2P48431 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC12.97□□□□□ -0.33
SOX2P48431 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC12.97□□□□□ -0.33
SOX2P48431 AC004840.1-201ENST00000636359 365 ntBASIC12.97□□□□□ -0.33
SOX2P48431 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
SOX2P48431 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
SOX2P48431 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
SOX2P48431 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
SOX2P48431 PLA2G4F-202ENST00000397272 5587 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
SOX2P48431 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC12.97□□□□□ -0.33
SOX2P48431 ALOX15B-201ENST00000380173 2605 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
SOX2P48431 ABCB8-202ENST00000358849 4683 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
SOX2P48431 ZBTB11-201ENST00000312938 6020 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
SOX2P48431 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
SOX2P48431 MROH2A-208ENST00000610772 5324 ntAPPRIS P2 TSL 5 BASIC12.97□□□□□ -0.33
SOX2P48431 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
SOX2P48431 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
SOX2P48431 AC023794.5-201ENST00000564380 2157 ntBASIC12.97□□□□□ -0.33
SOX2P48431 GOPC-202ENST00000368498 4450 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
SOX2P48431 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
SOX2P48431 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
SOX2P48431 SNX19-211ENST00000533214 3096 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
SOX2P48431 ZC2HC1A-201ENST00000263849 3352 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
SOX2P48431 TNN-202ENST00000621086 4234 ntTSL 5 BASIC12.96□□□□□ -0.33
SOX2P48431 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC12.96□□□□□ -0.33
SOX2P48431 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
SOX2P48431 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
SOX2P48431 KIAA0895-203ENST00000338533 4132 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
SOX2P48431 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
SOX2P48431 C8orf49-201ENST00000525043 1968 ntBASIC12.96□□□□□ -0.33
SOX2P48431 KRT74-203ENST00000549343 2858 ntTSL 5 BASIC12.96□□□□□ -0.33
SOX2P48431 NUP133-201ENST00000261396 5207 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
SOX2P48431 GALC-206ENST00000544807 2528 ntTSL 2 BASIC12.96□□□□□ -0.33
SOX2P48431 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC12.96□□□□□ -0.33
SOX2P48431 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC12.96□□□□□ -0.33
SOX2P48431 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
SOX2P48431 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
SOX2P48431 SLC16A1-201ENST00000369626 3910 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
SOX2P48431 DLGAP1-205ENST00000400150 5332 ntTSL 5 BASIC12.96□□□□□ -0.33
SOX2P48431 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
SOX2P48431 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
SOX2P48431 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
SOX2P48431 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
SOX2P48431 RNU1-114P-201ENST00000365297 166 ntBASIC12.96□□□□□ -0.33
SOX2P48431 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
SOX2P48431 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC12.96□□□□□ -0.33
SOX2P48431 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC12.96□□□□□ -0.33
SOX2P48431 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC12.96□□□□□ -0.33
SOX2P48431 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
SOX2P48431 TMEM198B-204ENST00000484016 896 ntBASIC12.96□□□□□ -0.33
SOX2P48431 RPL13AP25-201ENST00000484130 612 ntBASIC12.96□□□□□ -0.33
SOX2P48431 AC104794.3-201ENST00000566840 1248 ntBASIC12.96□□□□□ -0.33
SOX2P48431 PRR29-204ENST00000577953 565 ntTSL 4 BASIC12.96□□□□□ -0.33
SOX2P48431 LSM12-202ENST00000585388 942 ntTSL 3 BASIC12.96□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms