Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 SESN3-201ENST00000278499 1710 ntTSL 2 BASIC17.08■□□□□ 0.33
BRCA1P38398 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
BRCA1P38398 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
BRCA1P38398 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC17.08■□□□□ 0.33
BRCA1P38398 S100A2-202ENST00000368708 998 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
BRCA1P38398 DPPA5-201ENST00000370370 679 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
BRCA1P38398 REG3G-202ENST00000393897 856 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
BRCA1P38398 CDRT15L2-201ENST00000399044 1048 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
BRCA1P38398 WDR54-202ENST00000409791 854 ntTSL 3 BASIC17.08■□□□□ 0.33
BRCA1P38398 KCNC4-AS1-201ENST00000455967 748 ntTSL 2 BASIC17.08■□□□□ 0.33
BRCA1P38398 NAV2-AS2-201ENST00000533767 782 ntTSL 2 BASIC17.08■□□□□ 0.33
BRCA1P38398 AC007223.1-201ENST00000564076 572 ntTSL 3 BASIC17.08■□□□□ 0.33
BRCA1P38398 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC17.08■□□□□ 0.33
BRCA1P38398 CYP1B1-AS1-204ENST00000589303 579 ntTSL 5 BASIC17.08■□□□□ 0.33
BRCA1P38398 Metazoa_SRP.173-201ENST00000614020 273 ntBASIC17.08■□□□□ 0.33
BRCA1P38398 BX322562.1-201ENST00000617004 561 ntBASIC17.08■□□□□ 0.33
BRCA1P38398 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
BRCA1P38398 DUOXA1-205ENST00000558422 1678 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
BRCA1P38398 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC17.08■□□□□ 0.32
BRCA1P38398 AC018442.1-201ENST00000421439 2061 ntBASIC17.08■□□□□ 0.32
BRCA1P38398 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
BRCA1P38398 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
BRCA1P38398 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
BRCA1P38398 AC026691.1-201ENST00000602502 2017 ntBASIC17.08■□□□□ 0.32
BRCA1P38398 AC215219.1-201ENST00000400706 1817 ntBASIC17.08■□□□□ 0.32
BRCA1P38398 RIBC1-202ENST00000375327 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
BRCA1P38398 NAAA-203ENST00000505594 1425 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
BRCA1P38398 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
BRCA1P38398 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
BRCA1P38398 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
BRCA1P38398 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC17.08■□□□□ 0.32
BRCA1P38398 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
BRCA1P38398 AC008620.2-201ENST00000510294 1569 ntBASIC17.08■□□□□ 0.32
BRCA1P38398 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
BRCA1P38398 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
BRCA1P38398 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
BRCA1P38398 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
BRCA1P38398 AC034228.2-201ENST00000432558 459 ntTSL 3 BASIC17.07■□□□□ 0.32
BRCA1P38398 NDUFA3-214ENST00000485876 963 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
BRCA1P38398 OR4A49P-201ENST00000527050 632 ntBASIC17.07■□□□□ 0.32
BRCA1P38398 AP003785.1-201ENST00000544959 492 ntTSL 4 BASIC17.07■□□□□ 0.32
BRCA1P38398 AC018845.3-201ENST00000562536 516 ntTSL 3 BASIC17.07■□□□□ 0.32
BRCA1P38398 LIMD2-210ENST00000582055 509 ntTSL 2 BASIC17.07■□□□□ 0.32
BRCA1P38398 AC083798.2-202ENST00000609469 553 ntTSL 4 BASIC17.07■□□□□ 0.32
BRCA1P38398 LINC00969-253ENST00000625338 804 ntTSL 5 BASIC17.07■□□□□ 0.32
BRCA1P38398 EIF3F-209ENST00000640290 372 ntTSL 5 BASIC17.07■□□□□ 0.32
BRCA1P38398 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
BRCA1P38398 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
BRCA1P38398 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
BRCA1P38398 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
BRCA1P38398 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
BRCA1P38398 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
BRCA1P38398 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
BRCA1P38398 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
BRCA1P38398 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
BRCA1P38398 TTC23L-203ENST00000505624 1353 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
BRCA1P38398 SPATA21-202ENST00000375577 1136 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
BRCA1P38398 IGLV3-9-201ENST00000390316 461 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
BRCA1P38398 CASP2-203ENST00000392925 616 ntTSL 3 BASIC17.07■□□□□ 0.32
BRCA1P38398 CFL1P6-201ENST00000400899 494 ntBASIC17.07■□□□□ 0.32
BRCA1P38398 FLJ37035-201ENST00000419400 446 ntTSL 3 BASIC17.07■□□□□ 0.32
BRCA1P38398 KCNMA1-AS1-201ENST00000426234 863 ntTSL 5 BASIC17.07■□□□□ 0.32
BRCA1P38398 AC093106.1-201ENST00000437271 352 ntBASIC17.07■□□□□ 0.32
BRCA1P38398 AL353653.1-201ENST00000452336 638 ntTSL 2 BASIC17.07■□□□□ 0.32
BRCA1P38398 IGKV1OR2-108-201ENST00000453673 353 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
BRCA1P38398 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC17.07■□□□□ 0.32
BRCA1P38398 ZNF816-208ENST00000535506 529 ntTSL 4 BASIC17.07■□□□□ 0.32
BRCA1P38398 EEF1AKMT3-203ENST00000548256 561 ntTSL 4 BASIC17.07■□□□□ 0.32
BRCA1P38398 AC116025.1-201ENST00000575404 415 ntTSL 3 BASIC17.07■□□□□ 0.32
BRCA1P38398 INCA1-204ENST00000576820 973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
BRCA1P38398 AC022001.3-201ENST00000606330 596 ntBASIC17.07■□□□□ 0.32
BRCA1P38398 MIR6074-201ENST00000612054 107 ntBASIC17.07■□□□□ 0.32
BRCA1P38398 MIR8071-1-201ENST00000616769 65 ntBASIC17.07■□□□□ 0.32
BRCA1P38398 MIR8071-2-201ENST00000616772 65 ntBASIC17.07■□□□□ 0.32
BRCA1P38398 MEP1AP1-201ENST00000636082 1097 ntBASIC17.07■□□□□ 0.32
BRCA1P38398 PAX6-237ENST00000638696 1203 ntTSL 5 BASIC17.07■□□□□ 0.32
BRCA1P38398 SFTPA2-205ENST00000640627 195 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
BRCA1P38398 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
BRCA1P38398 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
BRCA1P38398 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
BRCA1P38398 FAM83A-AS1-202ENST00000520576 1347 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
BRCA1P38398 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
BRCA1P38398 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
BRCA1P38398 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
BRCA1P38398 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC17.06■□□□□ 0.32
BRCA1P38398 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
BRCA1P38398 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
BRCA1P38398 ATP5C1-201ENST00000335698 1078 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
BRCA1P38398 TMSB4X-202ENST00000380635 767 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
BRCA1P38398 HMGA1P2-201ENST00000430198 324 ntBASIC17.06■□□□□ 0.32
BRCA1P38398 OR4C14P-201ENST00000440929 923 ntBASIC17.06■□□□□ 0.32
BRCA1P38398 FAM86JP-202ENST00000484500 988 ntBASIC17.06■□□□□ 0.32
BRCA1P38398 CMTM1-219ENST00000533953 934 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
BRCA1P38398 BOLA3P2-201ENST00000586496 323 ntBASIC17.06■□□□□ 0.32
BRCA1P38398 AL590556.2-202ENST00000636906 844 ntBASIC17.06■□□□□ 0.32
BRCA1P38398 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
BRCA1P38398 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
BRCA1P38398 MAGEC3-205ENST00000544766 1707 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
BRCA1P38398 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
BRCA1P38398 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms