Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DMBP28068 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DMBP28068 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC11.24□□□□□ -0.61
HLA-DMBP28068 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DMBP28068 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DMBP28068 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DMBP28068 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DMBP28068 AC005252.3-201ENST00000623855 2258 ntBASIC11.24□□□□□ -0.61
HLA-DMBP28068 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DMBP28068 RRAGD-201ENST00000359203 4042 ntTSL 2 BASIC11.24□□□□□ -0.61
HLA-DMBP28068 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DMBP28068 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DMBP28068 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DMBP28068 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DMBP28068 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DMBP28068 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DMBP28068 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DMBP28068 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC11.24□□□□□ -0.61
HLA-DMBP28068 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DMBP28068 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DMBP28068 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DMBP28068 AL512384.1-201ENST00000406683 331 ntBASIC11.24□□□□□ -0.61
HLA-DMBP28068 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC11.24□□□□□ -0.61
HLA-DMBP28068 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DMBP28068 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC11.24□□□□□ -0.61
HLA-DMBP28068 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC11.24□□□□□ -0.61
HLA-DMBP28068 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DMBP28068 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
HLA-DMBP28068 AC133539.2-201ENST00000604757 467 ntBASIC11.24□□□□□ -0.61
HLA-DMBP28068 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
HLA-DMBP28068 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
HLA-DMBP28068 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC11.24□□□□□ -0.61
HLA-DMBP28068 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DMBP28068 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC11.24□□□□□ -0.61
HLA-DMBP28068 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DMBP28068 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DMBP28068 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC11.24□□□□□ -0.61
HLA-DMBP28068 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC11.24□□□□□ -0.61
HLA-DMBP28068 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC11.24□□□□□ -0.61
HLA-DMBP28068 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DMBP28068 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DMBP28068 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC11.24□□□□□ -0.61
HLA-DMBP28068 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DMBP28068 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DMBP28068 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DMBP28068 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC11.24□□□□□ -0.61
HLA-DMBP28068 AC015688.4-201ENST00000580780 1647 ntBASIC11.24□□□□□ -0.61
HLA-DMBP28068 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
HLA-DMBP28068 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DMBP28068 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DMBP28068 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
HLA-DMBP28068 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DMBP28068 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC11.23□□□□□ -0.61
HLA-DMBP28068 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DMBP28068 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DMBP28068 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC11.23□□□□□ -0.61
HLA-DMBP28068 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DMBP28068 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DMBP28068 INE2-201ENST00000630399 1874 ntBASIC11.23□□□□□ -0.61
HLA-DMBP28068 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DMBP28068 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DMBP28068 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DMBP28068 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DMBP28068 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DMBP28068 TMPRSS6-203ENST00000406725 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DMBP28068 MYADML-201ENST00000474610 2147 ntBASIC11.23□□□□□ -0.61
HLA-DMBP28068 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DMBP28068 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DMBP28068 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
HLA-DMBP28068 TRIO-202ENST00000344204 11100 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DMBP28068 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
HLA-DMBP28068 DEK-202ENST00000397239 3427 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DMBP28068 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DMBP28068 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DMBP28068 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DMBP28068 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DMBP28068 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC11.23□□□□□ -0.61
HLA-DMBP28068 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC11.23□□□□□ -0.61
HLA-DMBP28068 ELK1P1-201ENST00000485699 580 ntBASIC11.23□□□□□ -0.61
HLA-DMBP28068 GIMAP3P-201ENST00000495150 836 ntBASIC11.23□□□□□ -0.61
HLA-DMBP28068 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DMBP28068 NEU3-203ENST00000529024 581 ntTSL 3 BASIC11.23□□□□□ -0.61
HLA-DMBP28068 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC11.23□□□□□ -0.61
HLA-DMBP28068 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DMBP28068 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC11.23□□□□□ -0.61
HLA-DMBP28068 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC11.23□□□□□ -0.61
HLA-DMBP28068 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC11.23□□□□□ -0.61
HLA-DMBP28068 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC11.23□□□□□ -0.61
HLA-DMBP28068 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DMBP28068 CTBP2P3-201ENST00000585629 1255 ntBASIC11.23□□□□□ -0.61
HLA-DMBP28068 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DMBP28068 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC11.23□□□□□ -0.61
HLA-DMBP28068 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC11.23□□□□□ -0.61
HLA-DMBP28068 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC11.23□□□□□ -0.61
HLA-DMBP28068 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
HLA-DMBP28068 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DMBP28068 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC11.23□□□□□ -0.61
HLA-DMBP28068 PPP6R2-202ENST00000359139 4035 ntAPPRIS ALT2 TSL 2 BASIC11.23□□□□□ -0.61
HLA-DMBP28068 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
HLA-DMBP28068 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Retrieved 100 of 98,524 protein–RNA pairs in 347.8 ms