Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC16.24■□□□□ 0.19
TPM1P09493 PRSS30P-206ENST00000641773 873 ntBASIC16.24■□□□□ 0.19
TPM1P09493 MAP4-204ENST00000395734 5590 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
TPM1P09493 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TPM1P09493 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TPM1P09493 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TPM1P09493 AC100757.3-201ENST00000622361 1406 ntBASIC16.24■□□□□ 0.19
TPM1P09493 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
TPM1P09493 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TPM1P09493 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
TPM1P09493 ERAP1-201ENST00000296754 5495 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TPM1P09493 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TPM1P09493 AC073548.1-201ENST00000624088 1882 ntBASIC16.24■□□□□ 0.19
TPM1P09493 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC16.24■□□□□ 0.19
TPM1P09493 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TPM1P09493 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TPM1P09493 WDR24-201ENST00000248142 2763 ntTSL 5 BASIC16.24■□□□□ 0.19
TPM1P09493 LINC01750-202ENST00000438293 3068 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TPM1P09493 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
TPM1P09493 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC16.24■□□□□ 0.19
TPM1P09493 B4GALT6-201ENST00000237019 2128 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TPM1P09493 GPR132-202ENST00000392585 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
TPM1P09493 CNTNAP1-201ENST00000264638 5276 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TPM1P09493 MKL1-203ENST00000402042 4343 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TPM1P09493 HGNC:18790-201ENST00000397958 2650 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
TPM1P09493 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TPM1P09493 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC16.23■□□□□ 0.19
TPM1P09493 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TPM1P09493 ISY1-203ENST00000393295 3842 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TPM1P09493 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TPM1P09493 MLXIP-208ENST00000538698 5097 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TPM1P09493 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
TPM1P09493 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC16.23■□□□□ 0.19
TPM1P09493 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC16.23■□□□□ 0.19
TPM1P09493 SPTBN2-204ENST00000529997 8085 ntTSL 5 BASIC16.23■□□□□ 0.19
TPM1P09493 HECTD1-203ENST00000553700 9080 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
TPM1P09493 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC16.23■□□□□ 0.19
TPM1P09493 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
TPM1P09493 BRSK2-202ENST00000382179 3576 ntTSL 2 BASIC16.23■□□□□ 0.19
TPM1P09493 RGS22-201ENST00000360863 4296 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
TPM1P09493 BRF1-202ENST00000379932 884 ntTSL 5 BASIC16.23■□□□□ 0.19
TPM1P09493 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC16.23■□□□□ 0.19
TPM1P09493 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC16.23■□□□□ 0.19
TPM1P09493 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC16.23■□□□□ 0.19
TPM1P09493 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC16.23■□□□□ 0.19
TPM1P09493 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TPM1P09493 VDAC1P7-201ENST00000462417 847 ntBASIC16.23■□□□□ 0.19
TPM1P09493 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC16.23■□□□□ 0.19
TPM1P09493 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC16.23■□□□□ 0.19
TPM1P09493 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TPM1P09493 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
TPM1P09493 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC16.23■□□□□ 0.19
TPM1P09493 AL391069.4-201ENST00000609583 481 ntBASIC16.23■□□□□ 0.19
TPM1P09493 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TPM1P09493 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TPM1P09493 GTF2IRD1-202ENST00000424337 3077 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TPM1P09493 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
TPM1P09493 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
TPM1P09493 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TPM1P09493 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
TPM1P09493 ZNF862-201ENST00000223210 6950 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
TPM1P09493 RGS9-210ENST00000635833 2308 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
TPM1P09493 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC16.23■□□□□ 0.19
TPM1P09493 BAG2-201ENST00000370693 6651 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TPM1P09493 MYLK-202ENST00000354792 7531 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
TPM1P09493 PTK7-205ENST00000352931 4023 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TPM1P09493 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
TPM1P09493 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TPM1P09493 TNNI1-207ENST00000622580 6142 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TPM1P09493 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TPM1P09493 ADAM12-202ENST00000368679 7938 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
TPM1P09493 AC025594.2-201ENST00000609480 3902 ntAPPRIS P1 TSL 3 BASIC16.22■□□□□ 0.19
TPM1P09493 BCL2L11-221ENST00000621302 5224 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
TPM1P09493 BCL2L11-222ENST00000622509 5231 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
TPM1P09493 SATB2-201ENST00000260926 5318 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TPM1P09493 SAMD15-201ENST00000216471 2564 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
TPM1P09493 CIPC-201ENST00000361786 4486 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TPM1P09493 RPS15-201ENST00000233609 534 ntTSL 2 BASIC16.22■□□□□ 0.19
TPM1P09493 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TPM1P09493 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TPM1P09493 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TPM1P09493 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC16.22■□□□□ 0.19
TPM1P09493 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TPM1P09493 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC16.22■□□□□ 0.19
TPM1P09493 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC16.22■□□□□ 0.19
TPM1P09493 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC16.22■□□□□ 0.19
TPM1P09493 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC16.22■□□□□ 0.19
TPM1P09493 RARRES2P5-201ENST00000564013 466 ntBASIC16.22■□□□□ 0.19
TPM1P09493 RPS15-205ENST00000586686 562 ntTSL 5 BASIC16.22■□□□□ 0.19
TPM1P09493 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC16.22■□□□□ 0.19
TPM1P09493 RPS15-208ENST00000591804 711 ntTSL 5 BASIC16.22■□□□□ 0.19
TPM1P09493 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
TPM1P09493 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC16.22■□□□□ 0.19
TPM1P09493 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
TPM1P09493 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
TPM1P09493 PLA2G3-201ENST00000215885 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TPM1P09493 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TPM1P09493 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TPM1P09493 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TPM1P09493 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms