Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC17.16■□□□□ 0.34
HLA-DOAP06340 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
HLA-DOAP06340 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
HLA-DOAP06340 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC17.16■□□□□ 0.34
HLA-DOAP06340 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC17.16■□□□□ 0.34
HLA-DOAP06340 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC17.16■□□□□ 0.34
HLA-DOAP06340 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC17.16■□□□□ 0.34
HLA-DOAP06340 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HLA-DOAP06340 AL354702.1-201ENST00000442006 1960 ntBASIC17.16■□□□□ 0.34
HLA-DOAP06340 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
HLA-DOAP06340 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC17.16■□□□□ 0.34
HLA-DOAP06340 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
HLA-DOAP06340 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HLA-DOAP06340 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HLA-DOAP06340 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
HLA-DOAP06340 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HLA-DOAP06340 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
HLA-DOAP06340 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC17.16■□□□□ 0.34
HLA-DOAP06340 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
HLA-DOAP06340 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
HLA-DOAP06340 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC17.16■□□□□ 0.34
HLA-DOAP06340 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
HLA-DOAP06340 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HLA-DOAP06340 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC17.16■□□□□ 0.34
HLA-DOAP06340 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HLA-DOAP06340 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC17.15■□□□□ 0.34
HLA-DOAP06340 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
HLA-DOAP06340 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC17.15■□□□□ 0.34
HLA-DOAP06340 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HLA-DOAP06340 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HLA-DOAP06340 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HLA-DOAP06340 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC17.15■□□□□ 0.34
HLA-DOAP06340 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC17.15■□□□□ 0.34
HLA-DOAP06340 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HLA-DOAP06340 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HLA-DOAP06340 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC17.15■□□□□ 0.34
HLA-DOAP06340 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
HLA-DOAP06340 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HLA-DOAP06340 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC17.15■□□□□ 0.34
HLA-DOAP06340 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HLA-DOAP06340 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC17.15■□□□□ 0.34
HLA-DOAP06340 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC17.15■□□□□ 0.34
HLA-DOAP06340 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC17.15■□□□□ 0.34
HLA-DOAP06340 DUTP3-201ENST00000450025 415 ntBASIC17.15■□□□□ 0.34
HLA-DOAP06340 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC17.15■□□□□ 0.34
HLA-DOAP06340 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HLA-DOAP06340 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC17.15■□□□□ 0.34
HLA-DOAP06340 SORD2P-201ENST00000558556 1069 ntBASIC17.15■□□□□ 0.34
HLA-DOAP06340 AC140658.4-201ENST00000561990 352 ntBASIC17.15■□□□□ 0.34
HLA-DOAP06340 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC17.15■□□□□ 0.34
HLA-DOAP06340 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC17.15■□□□□ 0.34
HLA-DOAP06340 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC17.15■□□□□ 0.34
HLA-DOAP06340 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
HLA-DOAP06340 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HLA-DOAP06340 MYADML-201ENST00000474610 2147 ntBASIC17.15■□□□□ 0.34
HLA-DOAP06340 AC104640.1-201ENST00000562617 2109 ntBASIC17.15■□□□□ 0.34
HLA-DOAP06340 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC17.15■□□□□ 0.34
HLA-DOAP06340 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
HLA-DOAP06340 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC17.15■□□□□ 0.34
HLA-DOAP06340 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HLA-DOAP06340 AP002353.1-201ENST00000528257 1599 ntBASIC17.15■□□□□ 0.34
HLA-DOAP06340 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
HLA-DOAP06340 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
HLA-DOAP06340 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
HLA-DOAP06340 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
HLA-DOAP06340 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC17.15■□□□□ 0.34
HLA-DOAP06340 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
HLA-DOAP06340 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
HLA-DOAP06340 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HLA-DOAP06340 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HLA-DOAP06340 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC17.14■□□□□ 0.33
HLA-DOAP06340 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC17.14■□□□□ 0.33
HLA-DOAP06340 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HLA-DOAP06340 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HLA-DOAP06340 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HLA-DOAP06340 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HLA-DOAP06340 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
HLA-DOAP06340 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC17.14■□□□□ 0.33
HLA-DOAP06340 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC17.14■□□□□ 0.33
HLA-DOAP06340 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HLA-DOAP06340 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC17.14■□□□□ 0.33
HLA-DOAP06340 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
HLA-DOAP06340 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC17.14■□□□□ 0.33
HLA-DOAP06340 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HLA-DOAP06340 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HLA-DOAP06340 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC17.14■□□□□ 0.33
HLA-DOAP06340 RN7SL277P-201ENST00000481521 288 ntBASIC17.14■□□□□ 0.33
HLA-DOAP06340 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC17.14■□□□□ 0.33
HLA-DOAP06340 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HLA-DOAP06340 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC17.14■□□□□ 0.33
HLA-DOAP06340 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC17.14■□□□□ 0.33
HLA-DOAP06340 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC17.14■□□□□ 0.33
HLA-DOAP06340 AC090386.2-201ENST00000623010 1039 ntBASIC17.14■□□□□ 0.33
HLA-DOAP06340 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HLA-DOAP06340 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
HLA-DOAP06340 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
HLA-DOAP06340 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
HLA-DOAP06340 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
HLA-DOAP06340 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
HLA-DOAP06340 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 88.1 ms