Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 HSPH1-204ENST00000445273 4987 ntTSL 2 BASIC11.86□□□□□ -0.51
HMGB3O15347 PTPRS-201ENST00000262963 4766 ntTSL 5 BASIC11.86□□□□□ -0.51
HMGB3O15347 PTPRS-210ENST00000592099 4766 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
HMGB3O15347 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
HMGB3O15347 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC11.86□□□□□ -0.51
HMGB3O15347 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC11.86□□□□□ -0.51
HMGB3O15347 CC2D1A-201ENST00000318003 3581 ntAPPRIS P2 TSL 1 (best) BASIC11.85□□□□□ -0.51
HMGB3O15347 LARP4B-201ENST00000316157 5642 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
HMGB3O15347 CTNNB1-202ENST00000396183 3268 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
HMGB3O15347 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
HMGB3O15347 SEC23A-201ENST00000307712 4135 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
HMGB3O15347 NTRK2-208ENST00000395882 7111 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
HMGB3O15347 AL359075.2-201ENST00000354921 4998 ntTSL 2 BASIC11.85□□□□□ -0.51
HMGB3O15347 SCNN1A-201ENST00000228916 3135 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
HMGB3O15347 LRSAM1-203ENST00000373322 2849 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
HMGB3O15347 UGGT2-203ENST00000376747 4832 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
HMGB3O15347 CEP170-204ENST00000366544 6805 ntTSL 5 BASIC11.85□□□□□ -0.51
HMGB3O15347 GTF2IRD2B-203ENST00000472837 3560 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
HMGB3O15347 RRM2B-211ENST00000621845 3483 ntTSL 2 BASIC11.85□□□□□ -0.51
HMGB3O15347 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
HMGB3O15347 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
HMGB3O15347 B4GALT6-201ENST00000237019 2128 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
HMGB3O15347 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
HMGB3O15347 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC11.85□□□□□ -0.51
HMGB3O15347 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC11.85□□□□□ -0.51
HMGB3O15347 KRT18P64-201ENST00000434946 1219 ntBASIC11.85□□□□□ -0.51
HMGB3O15347 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC11.85□□□□□ -0.51
HMGB3O15347 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
HMGB3O15347 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC11.85□□□□□ -0.51
HMGB3O15347 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC11.85□□□□□ -0.51
HMGB3O15347 AC079776.4-201ENST00000511039 504 ntBASIC11.85□□□□□ -0.51
HMGB3O15347 IGHV3-62-201ENST00000520057 340 ntBASIC11.85□□□□□ -0.51
HMGB3O15347 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC11.85□□□□□ -0.51
HMGB3O15347 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC11.85□□□□□ -0.51
HMGB3O15347 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
HMGB3O15347 RNF34-208ENST00000555076 593 ntTSL 3 BASIC11.85□□□□□ -0.51
HMGB3O15347 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC11.85□□□□□ -0.51
HMGB3O15347 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC11.85□□□□□ -0.51
HMGB3O15347 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
HMGB3O15347 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
HMGB3O15347 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC11.85□□□□□ -0.51
HMGB3O15347 SLC1A1-201ENST00000262352 3722 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
HMGB3O15347 FAM120B-205ENST00000630384 3721 ntAPPRIS ALT2 TSL 2 BASIC11.85□□□□□ -0.51
HMGB3O15347 SRPK3-208ENST00000489426 4479 ntAPPRIS ALT2 TSL 2 BASIC11.85□□□□□ -0.51
HMGB3O15347 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
HMGB3O15347 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
HMGB3O15347 CR382287.2-201ENST00000623370 1942 ntTSL 2 BASIC11.85□□□□□ -0.51
HMGB3O15347 PFKP-203ENST00000381125 2654 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
HMGB3O15347 PIK3R5-216ENST00000584803 2653 ntAPPRIS ALT1 TSL 5 BASIC11.85□□□□□ -0.51
HMGB3O15347 NPAS4-201ENST00000311034 3303 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
HMGB3O15347 PCDHAC1-201ENST00000253807 5299 ntAPPRIS P2 TSL 1 (best) BASIC11.85□□□□□ -0.51
HMGB3O15347 SAMD14-202ENST00000330175 4425 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
HMGB3O15347 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC11.85□□□□□ -0.51
HMGB3O15347 API5-203ENST00000455725 2257 ntTSL 2 BASIC11.85□□□□□ -0.51
HMGB3O15347 KIF1B-212ENST00000622724 8588 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
HMGB3O15347 AC118758.2-201ENST00000614242 2813 ntBASIC11.85□□□□□ -0.51
HMGB3O15347 AC023794.5-201ENST00000564380 2157 ntBASIC11.85□□□□□ -0.51
HMGB3O15347 KCNMA1-210ENST00000404771 4014 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
HMGB3O15347 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
HMGB3O15347 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
HMGB3O15347 CCDC187-203ENST00000569961 3158 ntAPPRIS P2 TSL 1 (best) BASIC11.85□□□□□ -0.51
HMGB3O15347 AC020658.7-201ENST00000624274 2442 ntBASIC11.85□□□□□ -0.51
HMGB3O15347 IKZF1-201ENST00000331340 6189 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
HMGB3O15347 AHI1-205ENST00000457866 5549 ntAPPRIS P2 TSL 1 (best) BASIC11.85□□□□□ -0.51
HMGB3O15347 ASAP3-202ENST00000437606 2865 ntAPPRIS ALT2 TSL 2 BASIC11.85□□□□□ -0.51
HMGB3O15347 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC11.84□□□□□ -0.51
HMGB3O15347 NLRP7-207ENST00000590030 3209 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
HMGB3O15347 TK1-203ENST00000588734 1681 ntTSL 2 BASIC11.84□□□□□ -0.51
HMGB3O15347 CABP4-201ENST00000325656 2559 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
HMGB3O15347 ATP2B2-210ENST00000638646 3465 ntTSL 5 BASIC11.84□□□□□ -0.51
HMGB3O15347 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC11.84□□□□□ -0.51
HMGB3O15347 PRKD1-201ENST00000331968 3726 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
HMGB3O15347 EPHA5-205ENST00000613740 8355 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
HMGB3O15347 TOX2-202ENST00000358131 2605 ntTSL 2 BASIC11.84□□□□□ -0.51
HMGB3O15347 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC11.84□□□□□ -0.51
HMGB3O15347 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
HMGB3O15347 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
HMGB3O15347 CCBE1-202ENST00000439986 6227 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
HMGB3O15347 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC11.84□□□□□ -0.51
HMGB3O15347 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
HMGB3O15347 ELN-222ENST00000458204 3147 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
HMGB3O15347 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC11.84□□□□□ -0.51
HMGB3O15347 HIST3H2BA-201ENST00000436555 524 ntBASIC11.84□□□□□ -0.51
HMGB3O15347 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC11.84□□□□□ -0.51
HMGB3O15347 AC093909.1-201ENST00000504731 1122 ntBASIC11.84□□□□□ -0.51
HMGB3O15347 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC11.84□□□□□ -0.51
HMGB3O15347 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC11.84□□□□□ -0.51
HMGB3O15347 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
HMGB3O15347 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC11.84□□□□□ -0.51
HMGB3O15347 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC11.84□□□□□ -0.51
HMGB3O15347 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC11.84□□□□□ -0.51
HMGB3O15347 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC11.84□□□□□ -0.51
HMGB3O15347 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC11.84□□□□□ -0.51
HMGB3O15347 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC11.84□□□□□ -0.51
HMGB3O15347 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
HMGB3O15347 RGS9-210ENST00000635833 2308 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
HMGB3O15347 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
HMGB3O15347 UXT-AS1-201ENST00000590504 1525 ntBASIC11.84□□□□□ -0.51
HMGB3O15347 CTBP1-AS-201ENST00000625256 3886 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
HMGB3O15347 NLRP1-208ENST00000571451 5444 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms