Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 COX11-210ENST00000639671 696 ntBASIC15.23■□□□□ 0.03
AP4E1Q9UPM8 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
AP4E1Q9UPM8 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
AP4E1Q9UPM8 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
AP4E1Q9UPM8 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC15.23■□□□□ 0.03
AP4E1Q9UPM8 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC15.23■□□□□ 0.03
AP4E1Q9UPM8 E2F3P2-201ENST00000447755 1422 ntBASIC15.23■□□□□ 0.03
AP4E1Q9UPM8 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC15.23■□□□□ 0.03
AP4E1Q9UPM8 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
AP4E1Q9UPM8 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
AP4E1Q9UPM8 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
AP4E1Q9UPM8 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
AP4E1Q9UPM8 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC15.23■□□□□ 0.03
AP4E1Q9UPM8 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
AP4E1Q9UPM8 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC15.23■□□□□ 0.03
AP4E1Q9UPM8 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
AP4E1Q9UPM8 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC15.23■□□□□ 0.03
AP4E1Q9UPM8 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
AP4E1Q9UPM8 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC15.22■□□□□ 0.03
AP4E1Q9UPM8 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC15.22■□□□□ 0.03
AP4E1Q9UPM8 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
AP4E1Q9UPM8 NIN-202ENST00000324330 4364 ntTSL 5 BASIC15.22■□□□□ 0.03
AP4E1Q9UPM8 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC15.22■□□□□ 0.03
AP4E1Q9UPM8 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
AP4E1Q9UPM8 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC15.22■□□□□ 0.03
AP4E1Q9UPM8 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC15.22■□□□□ 0.03
AP4E1Q9UPM8 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC15.22■□□□□ 0.03
AP4E1Q9UPM8 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC15.22■□□□□ 0.03
AP4E1Q9UPM8 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC15.22■□□□□ 0.03
AP4E1Q9UPM8 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
AP4E1Q9UPM8 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
AP4E1Q9UPM8 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
AP4E1Q9UPM8 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC15.22■□□□□ 0.03
AP4E1Q9UPM8 AC104581.4-201ENST00000623126 3052 ntBASIC15.22■□□□□ 0.03
AP4E1Q9UPM8 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
AP4E1Q9UPM8 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
AP4E1Q9UPM8 RBM38-204ENST00000371219 760 ntTSL 2 BASIC15.22■□□□□ 0.03
AP4E1Q9UPM8 MIR658-201ENST00000385210 100 ntBASIC15.22■□□□□ 0.03
AP4E1Q9UPM8 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC15.22■□□□□ 0.03
AP4E1Q9UPM8 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC15.22■□□□□ 0.03
AP4E1Q9UPM8 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC15.22■□□□□ 0.03
AP4E1Q9UPM8 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC15.22■□□□□ 0.03
AP4E1Q9UPM8 OLR1-203ENST00000432556 950 ntTSL 2 BASIC15.22■□□□□ 0.03
AP4E1Q9UPM8 SKA2-202ENST00000437036 625 ntTSL 2 BASIC15.22■□□□□ 0.03
AP4E1Q9UPM8 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC15.22■□□□□ 0.03
AP4E1Q9UPM8 YBX1P6-201ENST00000442962 1002 ntBASIC15.22■□□□□ 0.03
AP4E1Q9UPM8 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC15.22■□□□□ 0.03
AP4E1Q9UPM8 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
AP4E1Q9UPM8 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC15.22■□□□□ 0.03
AP4E1Q9UPM8 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC15.22■□□□□ 0.03
AP4E1Q9UPM8 MIR4741-201ENST00000579822 90 ntBASIC15.22■□□□□ 0.03
AP4E1Q9UPM8 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC15.22■□□□□ 0.03
AP4E1Q9UPM8 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC15.22■□□□□ 0.03
AP4E1Q9UPM8 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
AP4E1Q9UPM8 MIR6805-201ENST00000615055 62 ntBASIC15.22■□□□□ 0.03
AP4E1Q9UPM8 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC15.22■□□□□ 0.03
AP4E1Q9UPM8 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
AP4E1Q9UPM8 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
AP4E1Q9UPM8 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
AP4E1Q9UPM8 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
AP4E1Q9UPM8 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC15.22■□□□□ 0.03
AP4E1Q9UPM8 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
AP4E1Q9UPM8 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC15.22■□□□□ 0.03
AP4E1Q9UPM8 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC15.22■□□□□ 0.03
AP4E1Q9UPM8 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
AP4E1Q9UPM8 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
AP4E1Q9UPM8 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
AP4E1Q9UPM8 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
AP4E1Q9UPM8 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC15.21■□□□□ 0.03
AP4E1Q9UPM8 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC15.21■□□□□ 0.03
AP4E1Q9UPM8 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
AP4E1Q9UPM8 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
AP4E1Q9UPM8 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC15.21■□□□□ 0.03
AP4E1Q9UPM8 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
AP4E1Q9UPM8 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
AP4E1Q9UPM8 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
AP4E1Q9UPM8 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
AP4E1Q9UPM8 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
AP4E1Q9UPM8 AK6-201ENST00000380818 1183 ntTSL 2 BASIC15.21■□□□□ 0.03
AP4E1Q9UPM8 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
AP4E1Q9UPM8 TISP43-201ENST00000409793 538 ntTSL 4 BASIC15.21■□□□□ 0.03
AP4E1Q9UPM8 HNRNPA1P27-201ENST00000412087 955 ntBASIC15.21■□□□□ 0.03
AP4E1Q9UPM8 AC079178.1-201ENST00000420915 656 ntBASIC15.21■□□□□ 0.03
AP4E1Q9UPM8 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC15.21■□□□□ 0.03
AP4E1Q9UPM8 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC15.21■□□□□ 0.03
AP4E1Q9UPM8 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
AP4E1Q9UPM8 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
AP4E1Q9UPM8 AC100850.1-201ENST00000506768 649 ntBASIC15.21■□□□□ 0.03
AP4E1Q9UPM8 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC15.21■□□□□ 0.03
AP4E1Q9UPM8 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
AP4E1Q9UPM8 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
AP4E1Q9UPM8 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
AP4E1Q9UPM8 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC15.21■□□□□ 0.03
AP4E1Q9UPM8 DUX4L45-201ENST00000566406 1057 ntBASIC15.21■□□□□ 0.03
AP4E1Q9UPM8 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
AP4E1Q9UPM8 MIR4259-201ENST00000584466 101 ntBASIC15.21■□□□□ 0.03
AP4E1Q9UPM8 AC132192.2-201ENST00000596206 1147 ntBASIC15.21■□□□□ 0.03
AP4E1Q9UPM8 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC15.21■□□□□ 0.03
AP4E1Q9UPM8 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
AP4E1Q9UPM8 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC15.21■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms