Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
TRIM39Q9HCM9 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
TRIM39Q9HCM9 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC14.6□□□□□ -0.07
TRIM39Q9HCM9 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
TRIM39Q9HCM9 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC14.6□□□□□ -0.07
TRIM39Q9HCM9 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
TRIM39Q9HCM9 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
TRIM39Q9HCM9 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC14.6□□□□□ -0.07
TRIM39Q9HCM9 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC14.6□□□□□ -0.07
TRIM39Q9HCM9 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
TRIM39Q9HCM9 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
TRIM39Q9HCM9 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
TRIM39Q9HCM9 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 KRTAP10-13P-201ENST00000412914 571 ntBASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 PTPA-218ENST00000435132 618 ntTSL 2 BASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 FAM58BP-201ENST00000439056 645 ntBASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 HNRNPA1P36-201ENST00000521313 955 ntBASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 PACS1-203ENST00000524815 628 ntTSL 4 BASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 USB1-203ENST00000539737 1212 ntTSL 2 BASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 AC103988.2-201ENST00000561804 725 ntBASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 AC100827.2-201ENST00000563214 1194 ntBASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 AC132192.2-201ENST00000596206 1147 ntBASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 AL118558.3-201ENST00000607414 1079 ntBASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 AL023803.2-201ENST00000620080 638 ntBASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 AL162426.1-201ENST00000624141 743 ntBASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 MX1-218ENST00000619682 1980 ntTSL 5 BASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 MTHFR-210ENST00000641407 2387 ntBASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC14.59□□□□□ -0.07
TRIM39Q9HCM9 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
TRIM39Q9HCM9 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
TRIM39Q9HCM9 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.07
TRIM39Q9HCM9 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
TRIM39Q9HCM9 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.07
TRIM39Q9HCM9 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC14.58□□□□□ -0.07
TRIM39Q9HCM9 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.07
TRIM39Q9HCM9 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
TRIM39Q9HCM9 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
TRIM39Q9HCM9 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
TRIM39Q9HCM9 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
TRIM39Q9HCM9 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC14.58□□□□□ -0.08
TRIM39Q9HCM9 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
TRIM39Q9HCM9 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
TRIM39Q9HCM9 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC14.58□□□□□ -0.08
TRIM39Q9HCM9 DENND3-211ENST00000519811 5482 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
TRIM39Q9HCM9 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
TRIM39Q9HCM9 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
TRIM39Q9HCM9 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
TRIM39Q9HCM9 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
TRIM39Q9HCM9 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
TRIM39Q9HCM9 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC14.58□□□□□ -0.08
TRIM39Q9HCM9 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC14.58□□□□□ -0.08
TRIM39Q9HCM9 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC14.58□□□□□ -0.08
TRIM39Q9HCM9 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
TRIM39Q9HCM9 AC021723.1-201ENST00000486306 515 ntBASIC14.58□□□□□ -0.08
TRIM39Q9HCM9 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
TRIM39Q9HCM9 CD74-212ENST00000524315 584 ntTSL 5 BASIC14.58□□□□□ -0.08
TRIM39Q9HCM9 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
TRIM39Q9HCM9 MIR4783-201ENST00000580343 82 ntBASIC14.58□□□□□ -0.08
TRIM39Q9HCM9 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC14.58□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms