Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
PCDH9Q9HC56 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PCDH9Q9HC56 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PCDH9Q9HC56 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
PCDH9Q9HC56 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PCDH9Q9HC56 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PCDH9Q9HC56 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PCDH9Q9HC56 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
PCDH9Q9HC56 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
PCDH9Q9HC56 AC112492.5-201ENST00000421897 457 ntBASIC15.17■□□□□ 0.02
PCDH9Q9HC56 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC15.17■□□□□ 0.02
PCDH9Q9HC56 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
PCDH9Q9HC56 RNA5SP486-201ENST00000515961 83 ntBASIC15.17■□□□□ 0.02
PCDH9Q9HC56 RPL8-205ENST00000527914 551 ntTSL 3 BASIC15.17■□□□□ 0.02
PCDH9Q9HC56 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC15.17■□□□□ 0.02
PCDH9Q9HC56 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC15.17■□□□□ 0.02
PCDH9Q9HC56 RAB43P1-201ENST00000561790 589 ntBASIC15.17■□□□□ 0.02
PCDH9Q9HC56 LARP4-220ENST00000615080 856 ntTSL 5 BASIC15.17■□□□□ 0.02
PCDH9Q9HC56 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PCDH9Q9HC56 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PCDH9Q9HC56 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PCDH9Q9HC56 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PCDH9Q9HC56 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PCDH9Q9HC56 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
PCDH9Q9HC56 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC15.17■□□□□ 0.02
PCDH9Q9HC56 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC15.17■□□□□ 0.02
PCDH9Q9HC56 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC15.17■□□□□ 0.02
PCDH9Q9HC56 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
PCDH9Q9HC56 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PCDH9Q9HC56 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PCDH9Q9HC56 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PCDH9Q9HC56 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC15.17■□□□□ 0.02
PCDH9Q9HC56 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
PCDH9Q9HC56 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
PCDH9Q9HC56 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PCDH9Q9HC56 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
PCDH9Q9HC56 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
PCDH9Q9HC56 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PCDH9Q9HC56 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
PCDH9Q9HC56 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PCDH9Q9HC56 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC15.17■□□□□ 0.02
PCDH9Q9HC56 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC15.16■□□□□ 0.02
PCDH9Q9HC56 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PCDH9Q9HC56 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
PCDH9Q9HC56 AL590440.2-201ENST00000641973 1595 ntBASIC15.16■□□□□ 0.02
PCDH9Q9HC56 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
PCDH9Q9HC56 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC15.16■□□□□ 0.02
PCDH9Q9HC56 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC15.16■□□□□ 0.02
PCDH9Q9HC56 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
PCDH9Q9HC56 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
PCDH9Q9HC56 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC15.16■□□□□ 0.02
PCDH9Q9HC56 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
PCDH9Q9HC56 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PCDH9Q9HC56 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PCDH9Q9HC56 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
PCDH9Q9HC56 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PCDH9Q9HC56 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PCDH9Q9HC56 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
PCDH9Q9HC56 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC15.16■□□□□ 0.02
PCDH9Q9HC56 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
PCDH9Q9HC56 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC15.16■□□□□ 0.02
PCDH9Q9HC56 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC15.16■□□□□ 0.02
PCDH9Q9HC56 FAM197Y7-201ENST00000432892 766 ntBASIC15.16■□□□□ 0.02
PCDH9Q9HC56 AC234783.1-201ENST00000441761 496 ntBASIC15.16■□□□□ 0.02
PCDH9Q9HC56 AL590640.2-201ENST00000457038 527 ntBASIC15.16■□□□□ 0.02
PCDH9Q9HC56 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC15.16■□□□□ 0.02
PCDH9Q9HC56 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC15.16■□□□□ 0.02
PCDH9Q9HC56 KRT90P-201ENST00000549264 1064 ntBASIC15.16■□□□□ 0.02
PCDH9Q9HC56 SORD2P-201ENST00000558556 1069 ntBASIC15.16■□□□□ 0.02
PCDH9Q9HC56 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC15.16■□□□□ 0.02
PCDH9Q9HC56 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
PCDH9Q9HC56 ECM1P1-201ENST00000604092 1279 ntBASIC15.16■□□□□ 0.02
PCDH9Q9HC56 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
PCDH9Q9HC56 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
PCDH9Q9HC56 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
PCDH9Q9HC56 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PCDH9Q9HC56 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
PCDH9Q9HC56 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PCDH9Q9HC56 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC15.16■□□□□ 0.02
PCDH9Q9HC56 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PCDH9Q9HC56 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
PCDH9Q9HC56 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC15.16■□□□□ 0.02
PCDH9Q9HC56 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC15.16■□□□□ 0.02
PCDH9Q9HC56 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
PCDH9Q9HC56 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC15.16■□□□□ 0.02
PCDH9Q9HC56 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PCDH9Q9HC56 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
PCDH9Q9HC56 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC15.15■□□□□ 0.02
PCDH9Q9HC56 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
PCDH9Q9HC56 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PCDH9Q9HC56 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC15.15■□□□□ 0.02
PCDH9Q9HC56 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC15.15■□□□□ 0.02
PCDH9Q9HC56 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC15.15■□□□□ 0.02
PCDH9Q9HC56 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCDH9Q9HC56 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PCDH9Q9HC56 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PCDH9Q9HC56 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCDH9Q9HC56 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
PCDH9Q9HC56 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCDH9Q9HC56 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms