Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
VPS13AQ96RL7 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC14.05□□□□□ -0.16
VPS13AQ96RL7 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
VPS13AQ96RL7 OR7E115P-201ENST00000382617 1024 ntBASIC14.05□□□□□ -0.16
VPS13AQ96RL7 U73169.1-201ENST00000395152 367 ntBASIC14.05□□□□□ -0.16
VPS13AQ96RL7 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC14.05□□□□□ -0.16
VPS13AQ96RL7 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
VPS13AQ96RL7 AC007223.1-201ENST00000564076 572 ntTSL 3 BASIC14.05□□□□□ -0.16
VPS13AQ96RL7 AC005323.2-202ENST00000581304 493 ntTSL 3 BASIC14.05□□□□□ -0.16
VPS13AQ96RL7 AC006547.1-209ENST00000596334 996 ntTSL 5 BASIC14.05□□□□□ -0.16
VPS13AQ96RL7 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC14.05□□□□□ -0.16
VPS13AQ96RL7 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
VPS13AQ96RL7 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
VPS13AQ96RL7 DCAF13-209ENST00000616836 2639 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
VPS13AQ96RL7 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC14.04□□□□□ -0.16
VPS13AQ96RL7 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC14.04□□□□□ -0.16
VPS13AQ96RL7 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC14.04□□□□□ -0.16
VPS13AQ96RL7 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
VPS13AQ96RL7 TRPM3-205ENST00000361823 1260 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
VPS13AQ96RL7 AC131011.1-201ENST00000366134 672 ntTSL 3 BASIC14.04□□□□□ -0.16
VPS13AQ96RL7 MED15P3-201ENST00000413613 326 ntBASIC14.04□□□□□ -0.16
VPS13AQ96RL7 AL136084.1-201ENST00000449172 318 ntBASIC14.04□□□□□ -0.16
VPS13AQ96RL7 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
VPS13AQ96RL7 CHD2-218ENST00000629346 1249 ntTSL 5 BASIC14.04□□□□□ -0.16
VPS13AQ96RL7 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
VPS13AQ96RL7 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
VPS13AQ96RL7 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
VPS13AQ96RL7 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC14.04□□□□□ -0.16
VPS13AQ96RL7 TMEM9B-202ENST00000525069 1433 ntTSL 2 BASIC14.04□□□□□ -0.16
VPS13AQ96RL7 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
VPS13AQ96RL7 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
VPS13AQ96RL7 AC139749.1-202ENST00000617529 3139 ntBASIC14.04□□□□□ -0.16
VPS13AQ96RL7 AP005117.1-202ENST00000581724 1908 ntBASIC14.04□□□□□ -0.16
VPS13AQ96RL7 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC14.04□□□□□ -0.16
VPS13AQ96RL7 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
VPS13AQ96RL7 MYB-201ENST00000316528 3571 ntTSL 5 BASIC14.04□□□□□ -0.16
VPS13AQ96RL7 PGAM2-201ENST00000297283 857 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
VPS13AQ96RL7 CDRT15L2-201ENST00000399044 1048 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
VPS13AQ96RL7 SPTLC1P3-201ENST00000403408 259 ntBASIC14.04□□□□□ -0.16
VPS13AQ96RL7 ATRAID-202ENST00000405489 1059 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
VPS13AQ96RL7 HNRNPA1P21-201ENST00000424115 961 ntBASIC14.04□□□□□ -0.16
VPS13AQ96RL7 AC133141.1-201ENST00000443015 339 ntBASIC14.04□□□□□ -0.16
VPS13AQ96RL7 BATF-202ENST00000555504 361 ntTSL 2 BASIC14.04□□□□□ -0.16
VPS13AQ96RL7 AP001094.3-201ENST00000580491 616 ntTSL 2 BASIC14.04□□□□□ -0.16
VPS13AQ96RL7 C17orf62-234ENST00000584503 584 ntTSL 2 BASIC14.04□□□□□ -0.16
VPS13AQ96RL7 OVOL3-201ENST00000585332 695 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
VPS13AQ96RL7 AL359091.4-201ENST00000610052 409 ntBASIC14.04□□□□□ -0.16
VPS13AQ96RL7 OVOL3-202ENST00000633214 675 ntAPPRIS P2 TSL 5 BASIC14.04□□□□□ -0.16
VPS13AQ96RL7 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
VPS13AQ96RL7 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
VPS13AQ96RL7 CFAP36-204ENST00000406691 1575 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
VPS13AQ96RL7 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
VPS13AQ96RL7 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC14.04□□□□□ -0.16
VPS13AQ96RL7 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
VPS13AQ96RL7 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
VPS13AQ96RL7 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
VPS13AQ96RL7 DOC2GP-204ENST00000639052 2548 ntBASIC14.04□□□□□ -0.16
VPS13AQ96RL7 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
VPS13AQ96RL7 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC14.04□□□□□ -0.16
VPS13AQ96RL7 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
VPS13AQ96RL7 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
VPS13AQ96RL7 AC073210.1-201ENST00000414799 232 ntBASIC14.04□□□□□ -0.16
VPS13AQ96RL7 AL359092.2-201ENST00000423330 585 ntBASIC14.04□□□□□ -0.16
VPS13AQ96RL7 LRRC3-AS1-201ENST00000426578 784 ntTSL 3 BASIC14.04□□□□□ -0.16
VPS13AQ96RL7 CBR3-AS1-202ENST00000427491 741 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
VPS13AQ96RL7 AC004923.3-201ENST00000527532 355 ntBASIC14.04□□□□□ -0.16
VPS13AQ96RL7 TNFSF13B-206ENST00000542136 495 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
VPS13AQ96RL7 RPL18A-203ENST00000599870 1084 ntTSL 2 BASIC14.04□□□□□ -0.16
VPS13AQ96RL7 CBR3-AS1-207ENST00000608641 777 ntTSL 5 BASIC14.04□□□□□ -0.16
VPS13AQ96RL7 HPX-213ENST00000615166 826 ntTSL 5 BASIC14.04□□□□□ -0.16
VPS13AQ96RL7 HNF4A-206ENST00000457232 1339 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
VPS13AQ96RL7 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
VPS13AQ96RL7 SRP9-201ENST00000304786 1480 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
VPS13AQ96RL7 RPL13AP3-202ENST00000494676 1473 ntBASIC14.03□□□□□ -0.16
VPS13AQ96RL7 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
VPS13AQ96RL7 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
VPS13AQ96RL7 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC14.03□□□□□ -0.16
VPS13AQ96RL7 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
VPS13AQ96RL7 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
VPS13AQ96RL7 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
VPS13AQ96RL7 EFHB-202ENST00000344838 2389 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
VPS13AQ96RL7 AIG1-203ENST00000367596 559 ntTSL 2 BASIC14.03□□□□□ -0.16
VPS13AQ96RL7 PLA2G15-203ENST00000444212 943 ntTSL 2 BASIC14.03□□□□□ -0.16
VPS13AQ96RL7 SMIM15-202ENST00000507416 584 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
VPS13AQ96RL7 RPL4P6-201ENST00000438116 1304 ntBASIC14.03□□□□□ -0.16
VPS13AQ96RL7 AL008638.4-201ENST00000624792 1315 ntBASIC14.03□□□□□ -0.16
VPS13AQ96RL7 ECH1-201ENST00000221418 1411 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
VPS13AQ96RL7 CTSS-202ENST00000448301 1421 ntTSL 2 BASIC14.03□□□□□ -0.16
VPS13AQ96RL7 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
VPS13AQ96RL7 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC14.03□□□□□ -0.16
VPS13AQ96RL7 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
VPS13AQ96RL7 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
VPS13AQ96RL7 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
VPS13AQ96RL7 MYB-241ENST00000616088 3573 ntTSL 5 BASIC14.03□□□□□ -0.16
VPS13AQ96RL7 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
VPS13AQ96RL7 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC14.03□□□□□ -0.16
VPS13AQ96RL7 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
VPS13AQ96RL7 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
VPS13AQ96RL7 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
VPS13AQ96RL7 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC14.03□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 57.4 ms