Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 AP1G2-201ENST00000308724 3298 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 DLL4-201ENST00000249749 3372 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 AL590440.2-201ENST00000641973 1595 ntBASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
ATG4AQ8WYN0 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
ATG4AQ8WYN0 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
ATG4AQ8WYN0 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
ATG4AQ8WYN0 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
ATG4AQ8WYN0 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ATG4AQ8WYN0 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
ATG4AQ8WYN0 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
ATG4AQ8WYN0 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
ATG4AQ8WYN0 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
ATG4AQ8WYN0 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ATG4AQ8WYN0 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
ATG4AQ8WYN0 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
ATG4AQ8WYN0 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC15.23■□□□□ 0.03
ATG4AQ8WYN0 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
ATG4AQ8WYN0 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ATG4AQ8WYN0 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ATG4AQ8WYN0 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ATG4AQ8WYN0 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ATG4AQ8WYN0 AC236430.1-201ENST00000402231 743 ntBASIC15.23■□□□□ 0.03
ATG4AQ8WYN0 GOLGA6L11P-201ENST00000417252 1298 ntBASIC15.23■□□□□ 0.03
ATG4AQ8WYN0 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC15.23■□□□□ 0.03
ATG4AQ8WYN0 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC15.23■□□□□ 0.03
ATG4AQ8WYN0 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC15.23■□□□□ 0.03
ATG4AQ8WYN0 AC140912.1-201ENST00000577171 1054 ntBASIC15.23■□□□□ 0.03
ATG4AQ8WYN0 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
ATG4AQ8WYN0 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC15.23■□□□□ 0.03
ATG4AQ8WYN0 ENPP7P14-201ENST00000621765 1040 ntBASIC15.23■□□□□ 0.03
ATG4AQ8WYN0 AL033527.5-201ENST00000641382 801 ntBASIC15.23■□□□□ 0.03
ATG4AQ8WYN0 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ATG4AQ8WYN0 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
ATG4AQ8WYN0 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ATG4AQ8WYN0 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
ATG4AQ8WYN0 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ATG4AQ8WYN0 FOS-202ENST00000535987 1402 ntTSL 2 BASIC15.23■□□□□ 0.03
ATG4AQ8WYN0 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC15.23■□□□□ 0.03
ATG4AQ8WYN0 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
ATG4AQ8WYN0 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
ATG4AQ8WYN0 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
ATG4AQ8WYN0 METTL13-203ENST00000367737 2865 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 AL138709.1-201ENST00000614840 1693 ntBASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 AC002472.2-201ENST00000442739 958 ntBASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 FAM207CP-201ENST00000443486 507 ntBASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 AC012441.1-201ENST00000446669 685 ntBASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 AC190387.1-201ENST00000551683 408 ntBASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 SORD2P-201ENST00000558556 1069 ntBASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms