Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 SLC11A1-201ENST00000233202 3852 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
SYNE1Q8NF91 AC008132.1-202ENST00000342005 1389 ntBASIC4.59□□□□□ -1.68
SYNE1Q8NF91 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
SYNE1Q8NF91 APOBR-202ENST00000564831 3792 ntAPPRIS P2 TSL 1 (best) BASIC4.59□□□□□ -1.68
SYNE1Q8NF91 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC4.59□□□□□ -1.68
SYNE1Q8NF91 AC103702.1-201ENST00000548801 2630 ntBASIC4.59□□□□□ -1.68
SYNE1Q8NF91 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
SYNE1Q8NF91 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
SYNE1Q8NF91 PXK-210ENST00000479241 2817 ntTSL 2 BASIC4.59□□□□□ -1.68
SYNE1Q8NF91 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
SYNE1Q8NF91 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC4.59□□□□□ -1.68
SYNE1Q8NF91 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC4.59□□□□□ -1.68
SYNE1Q8NF91 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.68
SYNE1Q8NF91 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
SYNE1Q8NF91 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
SYNE1Q8NF91 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC4.59□□□□□ -1.68
SYNE1Q8NF91 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC4.59□□□□□ -1.68
SYNE1Q8NF91 CASC15-204ENST00000606197 3969 ntTSL 2 BASIC4.59□□□□□ -1.68
SYNE1Q8NF91 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC4.59□□□□□ -1.68
SYNE1Q8NF91 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
SYNE1Q8NF91 ABCB4-201ENST00000265723 4020 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
SYNE1Q8NF91 AC018529.2-202ENST00000611482 3087 ntBASIC4.59□□□□□ -1.68
SYNE1Q8NF91 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC4.59□□□□□ -1.68
SYNE1Q8NF91 SLC35F1-201ENST00000360388 4852 ntAPPRIS P2 TSL 1 (best) BASIC4.59□□□□□ -1.68
SYNE1Q8NF91 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC4.59□□□□□ -1.68
SYNE1Q8NF91 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
SYNE1Q8NF91 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC4.59□□□□□ -1.68
SYNE1Q8NF91 BID-213ENST00000615414 2236 ntTSL 5 BASIC4.59□□□□□ -1.68
SYNE1Q8NF91 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC4.59□□□□□ -1.68
SYNE1Q8NF91 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
SYNE1Q8NF91 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC4.59□□□□□ -1.68
SYNE1Q8NF91 CAPRIN1-202ENST00000389645 3498 ntAPPRIS ALT2 TSL 5 BASIC4.59□□□□□ -1.68
SYNE1Q8NF91 AC048382.5-201ENST00000618330 3667 ntTSL 5 BASIC4.59□□□□□ -1.68
SYNE1Q8NF91 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
SYNE1Q8NF91 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC4.59□□□□□ -1.68
SYNE1Q8NF91 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
SYNE1Q8NF91 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC4.59□□□□□ -1.68
SYNE1Q8NF91 CFL1-206ENST00000527344 962 ntTSL 2 BASIC4.59□□□□□ -1.68
SYNE1Q8NF91 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC4.59□□□□□ -1.68
SYNE1Q8NF91 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
SYNE1Q8NF91 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC4.59□□□□□ -1.68
SYNE1Q8NF91 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC4.59□□□□□ -1.68
SYNE1Q8NF91 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC4.59□□□□□ -1.68
SYNE1Q8NF91 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC4.59□□□□□ -1.68
SYNE1Q8NF91 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC4.59□□□□□ -1.68
SYNE1Q8NF91 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 AC136759.1-202ENST00000530858 2194 ntBASIC4.58□□□□□ -1.68
SYNE1Q8NF91 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 TNRC18P1-201ENST00000502875 3650 ntBASIC4.58□□□□□ -1.68
SYNE1Q8NF91 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 KLK3-207ENST00000595952 969 ntTSL 3 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 PCBP2-OT1-201ENST00000634357 590 ntBASIC4.58□□□□□ -1.68
SYNE1Q8NF91 AC011491.1-203ENST00000637688 543 ntBASIC4.58□□□□□ -1.68
SYNE1Q8NF91 AC004923.1-202ENST00000642106 209 ntBASIC4.58□□□□□ -1.68
SYNE1Q8NF91 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 BAIAP2-AS1-202ENST00000577066 4465 ntTSL 2 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 ZNF287-202ENST00000395825 3208 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 API5-202ENST00000420461 2009 ntTSL 2 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 NLRP2-201ENST00000263437 3496 ntAPPRIS ALT2 TSL 2 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 SLC9B2-202ENST00000394785 3126 ntAPPRIS P1 TSL 2 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 MAGEL2-201ENST00000532292 4298 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 BX537318.2-201ENST00000624893 4162 ntBASIC4.58□□□□□ -1.68
SYNE1Q8NF91 NPPA-201ENST00000376476 728 ntTSL 3 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 HSPB1P2-201ENST00000448722 546 ntBASIC4.58□□□□□ -1.68
SYNE1Q8NF91 AC245884.6-201ENST00000515672 1067 ntBASIC4.58□□□□□ -1.68
SYNE1Q8NF91 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 MIR5572-201ENST00000583188 137 ntBASIC4.58□□□□□ -1.68
SYNE1Q8NF91 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 RRM2B-211ENST00000621845 3483 ntTSL 2 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 JOSD1-201ENST00000216039 3648 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 ZDHHC8-203ENST00000405930 3112 ntTSL 2 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 ZNF341-202ENST00000375200 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 TRAPPC9-201ENST00000389328 4474 ntTSL 2 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
SYNE1Q8NF91 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC4.58□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms