Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
CCDC60Q8IWA6 RNA5SP359-201ENST00000364838 113 ntBASIC16.2■□□□□ 0.18
CCDC60Q8IWA6 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC60Q8IWA6 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC60Q8IWA6 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC16.2■□□□□ 0.18
CCDC60Q8IWA6 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC16.2■□□□□ 0.18
CCDC60Q8IWA6 AC079328.1-201ENST00000560358 952 ntBASIC16.2■□□□□ 0.18
CCDC60Q8IWA6 DRG2-220ENST00000583355 891 ntTSL 3 BASIC16.2■□□□□ 0.18
CCDC60Q8IWA6 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC16.2■□□□□ 0.18
CCDC60Q8IWA6 AC016629.1-201ENST00000596579 586 ntBASIC16.2■□□□□ 0.18
CCDC60Q8IWA6 AL109837.1-201ENST00000603272 613 ntBASIC16.2■□□□□ 0.18
CCDC60Q8IWA6 AC012044.1-201ENST00000603431 297 ntBASIC16.2■□□□□ 0.18
CCDC60Q8IWA6 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC16.2■□□□□ 0.18
CCDC60Q8IWA6 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC60Q8IWA6 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
CCDC60Q8IWA6 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC60Q8IWA6 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC16.2■□□□□ 0.18
CCDC60Q8IWA6 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC60Q8IWA6 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
CCDC60Q8IWA6 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CCDC60Q8IWA6 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC16.2■□□□□ 0.18
CCDC60Q8IWA6 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
CCDC60Q8IWA6 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
CCDC60Q8IWA6 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
CCDC60Q8IWA6 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
CCDC60Q8IWA6 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
CCDC60Q8IWA6 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
CCDC60Q8IWA6 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC60Q8IWA6 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC60Q8IWA6 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC16.19■□□□□ 0.18
CCDC60Q8IWA6 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC60Q8IWA6 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC60Q8IWA6 INTS4P1-203ENST00000641008 3683 ntBASIC16.19■□□□□ 0.18
CCDC60Q8IWA6 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC60Q8IWA6 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC60Q8IWA6 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
CCDC60Q8IWA6 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC16.19■□□□□ 0.18
CCDC60Q8IWA6 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC60Q8IWA6 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC16.19■□□□□ 0.18
CCDC60Q8IWA6 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC60Q8IWA6 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC60Q8IWA6 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC60Q8IWA6 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC60Q8IWA6 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
CCDC60Q8IWA6 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC16.19■□□□□ 0.18
CCDC60Q8IWA6 CEP164P1-201ENST00000455142 418 ntBASIC16.19■□□□□ 0.18
CCDC60Q8IWA6 PFN2-206ENST00000461930 606 ntTSL 4 BASIC16.19■□□□□ 0.18
CCDC60Q8IWA6 POU5F1P2-201ENST00000521750 823 ntBASIC16.19■□□□□ 0.18
CCDC60Q8IWA6 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC60Q8IWA6 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC16.19■□□□□ 0.18
CCDC60Q8IWA6 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
CCDC60Q8IWA6 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC16.19■□□□□ 0.18
CCDC60Q8IWA6 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC16.19■□□□□ 0.18
CCDC60Q8IWA6 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC16.19■□□□□ 0.18
CCDC60Q8IWA6 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC16.19■□□□□ 0.18
CCDC60Q8IWA6 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC16.19■□□□□ 0.18
CCDC60Q8IWA6 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC16.19■□□□□ 0.18
CCDC60Q8IWA6 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC60Q8IWA6 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC60Q8IWA6 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
CCDC60Q8IWA6 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
CCDC60Q8IWA6 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC60Q8IWA6 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC16.19■□□□□ 0.18
CCDC60Q8IWA6 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC60Q8IWA6 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC60Q8IWA6 NORAD-201ENST00000565493 5339 ntBASIC16.19■□□□□ 0.18
CCDC60Q8IWA6 AC106881.1-201ENST00000605849 3329 ntBASIC16.19■□□□□ 0.18
CCDC60Q8IWA6 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC60Q8IWA6 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC16.18■□□□□ 0.18
CCDC60Q8IWA6 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC60Q8IWA6 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC60Q8IWA6 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC60Q8IWA6 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
CCDC60Q8IWA6 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC60Q8IWA6 AP002353.1-201ENST00000528257 1599 ntBASIC16.18■□□□□ 0.18
CCDC60Q8IWA6 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC16.18■□□□□ 0.18
CCDC60Q8IWA6 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC60Q8IWA6 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC60Q8IWA6 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC60Q8IWA6 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
CCDC60Q8IWA6 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC60Q8IWA6 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC16.18■□□□□ 0.18
CCDC60Q8IWA6 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC60Q8IWA6 JTB-202ENST00000356648 1040 ntTSL 2 BASIC16.18■□□□□ 0.18
CCDC60Q8IWA6 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC16.18■□□□□ 0.18
CCDC60Q8IWA6 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC16.18■□□□□ 0.18
CCDC60Q8IWA6 OR2K2-202ENST00000374428 1038 ntBASIC16.18■□□□□ 0.18
CCDC60Q8IWA6 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC60Q8IWA6 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC16.18■□□□□ 0.18
CCDC60Q8IWA6 PTPA-217ENST00000434095 870 ntTSL 2 BASIC16.18■□□□□ 0.18
CCDC60Q8IWA6 AL161932.2-201ENST00000435436 679 ntBASIC16.18■□□□□ 0.18
CCDC60Q8IWA6 TPT1P11-201ENST00000458482 498 ntBASIC16.18■□□□□ 0.18
CCDC60Q8IWA6 AC005586.2-201ENST00000563946 837 ntBASIC16.18■□□□□ 0.18
CCDC60Q8IWA6 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC16.18■□□□□ 0.18
CCDC60Q8IWA6 HPN-206ENST00000597419 1212 ntTSL 5 BASIC16.18■□□□□ 0.18
CCDC60Q8IWA6 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC16.18■□□□□ 0.18
CCDC60Q8IWA6 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC16.18■□□□□ 0.18
CCDC60Q8IWA6 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC16.18■□□□□ 0.18
CCDC60Q8IWA6 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC60Q8IWA6 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms