Protein–RNA interactions for Protein: Q2KHR2

RFX7, DNA-binding protein RFX7, humanhuman

Predictions only

Length 1,363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX7Q2KHR2 RTN3P1-201ENST00000536295 711 ntBASIC17.54■□□□□ 0.4
RFX7Q2KHR2 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC17.54■□□□□ 0.4
RFX7Q2KHR2 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
RFX7Q2KHR2 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC17.54■□□□□ 0.4
RFX7Q2KHR2 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC17.54■□□□□ 0.4
RFX7Q2KHR2 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC17.54■□□□□ 0.4
RFX7Q2KHR2 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC17.54■□□□□ 0.4
RFX7Q2KHR2 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC17.54■□□□□ 0.4
RFX7Q2KHR2 OS9-204ENST00000389146 2091 ntTSL 2 BASIC17.54■□□□□ 0.4
RFX7Q2KHR2 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
RFX7Q2KHR2 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RFX7Q2KHR2 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
RFX7Q2KHR2 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RFX7Q2KHR2 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
RFX7Q2KHR2 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RFX7Q2KHR2 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RFX7Q2KHR2 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RFX7Q2KHR2 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
RFX7Q2KHR2 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RFX7Q2KHR2 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
RFX7Q2KHR2 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RFX7Q2KHR2 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC17.54■□□□□ 0.4
RFX7Q2KHR2 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
RFX7Q2KHR2 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC17.54■□□□□ 0.4
RFX7Q2KHR2 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC17.54■□□□□ 0.4
RFX7Q2KHR2 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
RFX7Q2KHR2 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC17.54■□□□□ 0.4
RFX7Q2KHR2 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RFX7Q2KHR2 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
RFX7Q2KHR2 LAP3P2-201ENST00000454686 1454 ntBASIC17.54■□□□□ 0.4
RFX7Q2KHR2 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
RFX7Q2KHR2 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC17.54■□□□□ 0.4
RFX7Q2KHR2 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC17.54■□□□□ 0.4
RFX7Q2KHR2 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC17.54■□□□□ 0.4
RFX7Q2KHR2 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
RFX7Q2KHR2 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
RFX7Q2KHR2 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC17.54■□□□□ 0.4
RFX7Q2KHR2 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
RFX7Q2KHR2 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
RFX7Q2KHR2 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
RFX7Q2KHR2 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC17.54■□□□□ 0.4
RFX7Q2KHR2 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
RFX7Q2KHR2 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RFX7Q2KHR2 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
RFX7Q2KHR2 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC17.53■□□□□ 0.4
RFX7Q2KHR2 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
RFX7Q2KHR2 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
RFX7Q2KHR2 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
RFX7Q2KHR2 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
RFX7Q2KHR2 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC17.53■□□□□ 0.4
RFX7Q2KHR2 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC17.53■□□□□ 0.4
RFX7Q2KHR2 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
RFX7Q2KHR2 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC17.53■□□□□ 0.4
RFX7Q2KHR2 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC17.53■□□□□ 0.4
RFX7Q2KHR2 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC17.53■□□□□ 0.4
RFX7Q2KHR2 SPCS2P2-201ENST00000603270 608 ntBASIC17.53■□□□□ 0.4
RFX7Q2KHR2 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC17.53■□□□□ 0.4
RFX7Q2KHR2 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RFX7Q2KHR2 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC17.53■□□□□ 0.4
RFX7Q2KHR2 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
RFX7Q2KHR2 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RFX7Q2KHR2 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RFX7Q2KHR2 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC17.53■□□□□ 0.4
RFX7Q2KHR2 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RFX7Q2KHR2 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC17.53■□□□□ 0.4
RFX7Q2KHR2 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC17.53■□□□□ 0.4
RFX7Q2KHR2 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
RFX7Q2KHR2 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
RFX7Q2KHR2 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RFX7Q2KHR2 HSPA8P5-201ENST00000456928 2069 ntBASIC17.53■□□□□ 0.4
RFX7Q2KHR2 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC17.53■□□□□ 0.4
RFX7Q2KHR2 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RFX7Q2KHR2 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RFX7Q2KHR2 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
RFX7Q2KHR2 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RFX7Q2KHR2 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
RFX7Q2KHR2 AC027601.5-201ENST00000624065 2482 ntBASIC17.53■□□□□ 0.4
RFX7Q2KHR2 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
RFX7Q2KHR2 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RFX7Q2KHR2 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
RFX7Q2KHR2 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
RFX7Q2KHR2 AC239868.1-201ENST00000369385 493 ntBASIC17.53■□□□□ 0.4
RFX7Q2KHR2 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC17.53■□□□□ 0.4
RFX7Q2KHR2 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC17.53■□□□□ 0.4
RFX7Q2KHR2 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC17.53■□□□□ 0.4
RFX7Q2KHR2 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC17.53■□□□□ 0.4
RFX7Q2KHR2 STUB1-204ENST00000564370 875 ntTSL 2 BASIC17.53■□□□□ 0.4
RFX7Q2KHR2 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC17.53■□□□□ 0.4
RFX7Q2KHR2 AC090386.2-201ENST00000623010 1039 ntBASIC17.53■□□□□ 0.4
RFX7Q2KHR2 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC17.53■□□□□ 0.4
RFX7Q2KHR2 AC018629.1-201ENST00000623381 1736 ntBASIC17.53■□□□□ 0.4
RFX7Q2KHR2 AHCYP4-201ENST00000419201 1315 ntBASIC17.52■□□□□ 0.4
RFX7Q2KHR2 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
RFX7Q2KHR2 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
RFX7Q2KHR2 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC17.52■□□□□ 0.4
RFX7Q2KHR2 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
RFX7Q2KHR2 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
RFX7Q2KHR2 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
RFX7Q2KHR2 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
RFX7Q2KHR2 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 63.5 ms