Protein–RNA interactions for Protein: P31275

HOXC12, Homeobox protein Hox-C12, humanhuman

Predictions only

Length 282 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC12P31275 MAP4-204ENST00000395734 5590 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
HOXC12P31275 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
HOXC12P31275 KRT8P4-201ENST00000509735 1454 ntBASIC13.1□□□□□ -0.31
HOXC12P31275 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HOXC12P31275 SATB2-211ENST00000614512 4972 ntTSL 5 BASIC13.1□□□□□ -0.31
HOXC12P31275 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC13.1□□□□□ -0.31
HOXC12P31275 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
HOXC12P31275 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
HOXC12P31275 ATN1-201ENST00000356654 4351 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HOXC12P31275 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC13.1□□□□□ -0.31
HOXC12P31275 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
HOXC12P31275 NHSL1-204ENST00000427025 7500 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
HOXC12P31275 TONSL-201ENST00000409379 4502 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HOXC12P31275 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HOXC12P31275 EGR2-202ENST00000411732 2824 ntTSL 2 BASIC13.1□□□□□ -0.31
HOXC12P31275 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HOXC12P31275 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC13.1□□□□□ -0.31
HOXC12P31275 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
HOXC12P31275 WDFY1-201ENST00000233055 4660 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HOXC12P31275 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
HOXC12P31275 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
HOXC12P31275 TRPM2-204ENST00000397932 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
HOXC12P31275 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HOXC12P31275 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HOXC12P31275 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HOXC12P31275 KC6-207ENST00000600644 2311 ntTSL 3 BASIC13.1□□□□□ -0.31
HOXC12P31275 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC13.1□□□□□ -0.31
HOXC12P31275 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HOXC12P31275 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
HOXC12P31275 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HOXC12P31275 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
HOXC12P31275 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HOXC12P31275 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HOXC12P31275 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
HOXC12P31275 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
HOXC12P31275 SERF2-209ENST00000409646 559 ntTSL 4 BASIC13.1□□□□□ -0.31
HOXC12P31275 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC13.1□□□□□ -0.31
HOXC12P31275 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC13.1□□□□□ -0.31
HOXC12P31275 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC13.1□□□□□ -0.31
HOXC12P31275 CNN2P10-201ENST00000443067 918 ntBASIC13.1□□□□□ -0.31
HOXC12P31275 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HOXC12P31275 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HOXC12P31275 RPS2P36-201ENST00000456516 831 ntBASIC13.1□□□□□ -0.31
HOXC12P31275 TMEM198B-204ENST00000484016 896 ntBASIC13.1□□□□□ -0.31
HOXC12P31275 AL391280.1-201ENST00000506969 1062 ntBASIC13.1□□□□□ -0.31
HOXC12P31275 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
HOXC12P31275 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC13.1□□□□□ -0.31
HOXC12P31275 CYGB-203ENST00000589145 788 ntTSL 3 BASIC13.1□□□□□ -0.31
HOXC12P31275 NDUFV2P1-201ENST00000596415 907 ntBASIC13.1□□□□□ -0.31
HOXC12P31275 MAGI1-217ENST00000611645 6398 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HOXC12P31275 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
HOXC12P31275 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC13.1□□□□□ -0.31
HOXC12P31275 ACE3P-201ENST00000423435 1973 ntBASIC13.1□□□□□ -0.31
HOXC12P31275 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HOXC12P31275 INF2-202ENST00000330634 7578 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
HOXC12P31275 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
HOXC12P31275 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
HOXC12P31275 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC13.1□□□□□ -0.31
HOXC12P31275 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC13.1□□□□□ -0.31
HOXC12P31275 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HOXC12P31275 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HOXC12P31275 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC13.1□□□□□ -0.31
HOXC12P31275 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
HOXC12P31275 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC13.1□□□□□ -0.31
HOXC12P31275 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC13.1□□□□□ -0.31
HOXC12P31275 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC13.1□□□□□ -0.31
HOXC12P31275 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC13.09□□□□□ -0.31
HOXC12P31275 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HOXC12P31275 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
HOXC12P31275 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
HOXC12P31275 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HOXC12P31275 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
HOXC12P31275 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
HOXC12P31275 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC13.09□□□□□ -0.31
HOXC12P31275 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
HOXC12P31275 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC13.09□□□□□ -0.31
HOXC12P31275 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
HOXC12P31275 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC13.09□□□□□ -0.31
HOXC12P31275 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC13.09□□□□□ -0.31
HOXC12P31275 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC13.09□□□□□ -0.31
HOXC12P31275 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HOXC12P31275 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
HOXC12P31275 AC104640.1-201ENST00000562617 2109 ntBASIC13.09□□□□□ -0.31
HOXC12P31275 TCOF1-207ENST00000504761 4467 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
HOXC12P31275 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC13.09□□□□□ -0.31
HOXC12P31275 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC13.09□□□□□ -0.31
HOXC12P31275 RERE-202ENST00000377464 6733 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
HOXC12P31275 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
HOXC12P31275 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HOXC12P31275 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HOXC12P31275 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
HOXC12P31275 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC13.09□□□□□ -0.31
HOXC12P31275 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
HOXC12P31275 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
HOXC12P31275 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
HOXC12P31275 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HOXC12P31275 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC13.09□□□□□ -0.31
HOXC12P31275 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HOXC12P31275 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
HOXC12P31275 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC13.09□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms