Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC11.41□□□□□ -0.58
CXCL1P09341 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC11.41□□□□□ -0.58
CXCL1P09341 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC11.41□□□□□ -0.58
CXCL1P09341 AP000842.3-202ENST00000569238 1080 ntBASIC11.41□□□□□ -0.58
CXCL1P09341 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
CXCL1P09341 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC11.41□□□□□ -0.58
CXCL1P09341 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC11.41□□□□□ -0.58
CXCL1P09341 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC11.41□□□□□ -0.58
CXCL1P09341 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
CXCL1P09341 ACTR3-201ENST00000263238 6718 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CXCL1P09341 C14orf39-201ENST00000321731 2813 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CXCL1P09341 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CXCL1P09341 AP1B1-202ENST00000357586 4176 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
CXCL1P09341 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CXCL1P09341 PAX8-203ENST00000348715 3966 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
CXCL1P09341 C12orf76-205ENST00000548191 2204 ntAPPRIS P1 TSL 2 BASIC11.41□□□□□ -0.58
CXCL1P09341 IFT122-204ENST00000349441 3569 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
CXCL1P09341 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CXCL1P09341 CSF3R-201ENST00000331941 2375 ntTSL 5 BASIC11.41□□□□□ -0.58
CXCL1P09341 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC11.41□□□□□ -0.58
CXCL1P09341 SARDH-204ENST00000371872 3344 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CXCL1P09341 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
CXCL1P09341 ADAM32-206ENST00000519315 2168 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
CXCL1P09341 PFAS-201ENST00000314666 5371 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CXCL1P09341 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC11.41□□□□□ -0.58
CXCL1P09341 PLAT-201ENST00000220809 2706 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CXCL1P09341 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC11.41□□□□□ -0.58
CXCL1P09341 FLT4-212ENST00000619105 3806 ntTSL 5 BASIC11.41□□□□□ -0.58
CXCL1P09341 THEMIS2-201ENST00000328928 2337 ntTSL 2 BASIC11.41□□□□□ -0.58
CXCL1P09341 DLX1-201ENST00000341900 2130 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
CXCL1P09341 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CXCL1P09341 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
CXCL1P09341 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
CXCL1P09341 AC018445.4-201ENST00000624066 2291 ntBASIC11.4□□□□□ -0.58
CXCL1P09341 DHX58-201ENST00000251642 2617 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
CXCL1P09341 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
CXCL1P09341 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC11.4□□□□□ -0.58
CXCL1P09341 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
CXCL1P09341 ZMPSTE24-201ENST00000372759 3108 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
CXCL1P09341 R3HDM2-204ENST00000402412 4372 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
CXCL1P09341 ASB3-204ENST00000406687 2205 ntTSL 2 BASIC11.4□□□□□ -0.58
CXCL1P09341 DUSP14-205ENST00000614411 2207 ntAPPRIS P1 TSL 2 BASIC11.4□□□□□ -0.58
CXCL1P09341 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
CXCL1P09341 C1orf167-202ENST00000433342 4545 ntAPPRIS P5 TSL 5 BASIC11.4□□□□□ -0.58
CXCL1P09341 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC11.4□□□□□ -0.58
CXCL1P09341 EPRS-201ENST00000366923 5014 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
CXCL1P09341 AL355102.3-201ENST00000554299 1678 ntBASIC11.4□□□□□ -0.58
CXCL1P09341 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC11.4□□□□□ -0.58
CXCL1P09341 CNTD1-204ENST00000588408 2369 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
CXCL1P09341 MAGED1-201ENST00000326587 2747 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
CXCL1P09341 DPP3-211ENST00000532677 3078 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
CXCL1P09341 POLD1-205ENST00000595904 3402 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
CXCL1P09341 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC11.4□□□□□ -0.58
CXCL1P09341 KRT42P-202ENST00000438131 2895 ntTSL 2 BASIC11.4□□□□□ -0.58
CXCL1P09341 DYNC1LI1-201ENST00000273130 2504 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
CXCL1P09341 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
CXCL1P09341 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC11.4□□□□□ -0.58
CXCL1P09341 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC11.4□□□□□ -0.58
CXCL1P09341 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
CXCL1P09341 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
CXCL1P09341 CMC4-201ENST00000369479 864 ntAPPRIS P1 TSL 3 BASIC11.4□□□□□ -0.58
CXCL1P09341 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC11.4□□□□□ -0.58
CXCL1P09341 PTMS-202ENST00000389462 773 ntTSL 2 BASIC11.4□□□□□ -0.58
CXCL1P09341 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC11.4□□□□□ -0.58
CXCL1P09341 AC016730.1-201ENST00000420828 832 ntTSL 2 BASIC11.4□□□□□ -0.58
CXCL1P09341 AL671277.1-201ENST00000429656 993 ntBASIC11.4□□□□□ -0.58
CXCL1P09341 AC005014.1-201ENST00000432006 2976 ntBASIC11.4□□□□□ -0.58
CXCL1P09341 AC079781.3-201ENST00000449110 356 ntBASIC11.4□□□□□ -0.58
CXCL1P09341 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC11.4□□□□□ -0.58
CXCL1P09341 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC11.4□□□□□ -0.58
CXCL1P09341 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC11.4□□□□□ -0.58
CXCL1P09341 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC11.4□□□□□ -0.58
CXCL1P09341 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC11.4□□□□□ -0.58
CXCL1P09341 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC11.4□□□□□ -0.58
CXCL1P09341 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
CXCL1P09341 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC11.4□□□□□ -0.58
CXCL1P09341 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
CXCL1P09341 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
CXCL1P09341 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC11.4□□□□□ -0.58
CXCL1P09341 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC11.4□□□□□ -0.58
CXCL1P09341 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC11.4□□□□□ -0.58
CXCL1P09341 AC018845.2-201ENST00000568326 409 ntBASIC11.4□□□□□ -0.58
CXCL1P09341 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC11.4□□□□□ -0.58
CXCL1P09341 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC11.4□□□□□ -0.58
CXCL1P09341 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC11.4□□□□□ -0.58
CXCL1P09341 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC11.4□□□□□ -0.58
CXCL1P09341 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC11.4□□□□□ -0.58
CXCL1P09341 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC11.4□□□□□ -0.58
CXCL1P09341 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
CXCL1P09341 CDK2-201ENST00000266970 2296 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
CXCL1P09341 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC11.4□□□□□ -0.58
CXCL1P09341 REXO5-208ENST00000564274 2447 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
CXCL1P09341 LINC00637-201ENST00000556586 2056 ntTSL 2 BASIC11.4□□□□□ -0.58
CXCL1P09341 BCL2L11-221ENST00000621302 5224 ntAPPRIS ALT2 TSL 5 BASIC11.4□□□□□ -0.58
CXCL1P09341 BCL2L11-222ENST00000622509 5231 ntAPPRIS ALT2 TSL 5 BASIC11.4□□□□□ -0.58
CXCL1P09341 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
CXCL1P09341 CACNA1I-202ENST00000402142 10004 ntAPPRIS P4 TSL 1 (best) BASIC11.4□□□□□ -0.58
CXCL1P09341 NCOR2-202ENST00000404121 7175 ntTSL 5 BASIC11.4□□□□□ -0.58
CXCL1P09341 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
CXCL1P09341 ZNF821-214ENST00000565601 1858 ntAPPRIS P1 TSL 2 BASIC11.4□□□□□ -0.59
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms