Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 KRT8P12-202ENST00000472924 1397 ntBASIC14.68□□□□□ -0.06
SHOX2O60902 NDUFAF7-201ENST00000002125 2176 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SHOX2O60902 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SHOX2O60902 BEND6-202ENST00000370746 2379 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
SHOX2O60902 KCNJ11-201ENST00000339994 2801 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
SHOX2O60902 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SHOX2O60902 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC14.68□□□□□ -0.06
SHOX2O60902 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SHOX2O60902 PLIN3-201ENST00000221957 2333 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
SHOX2O60902 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC14.67□□□□□ -0.06
SHOX2O60902 ZNF689-201ENST00000287461 3547 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SHOX2O60902 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC14.67□□□□□ -0.06
SHOX2O60902 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
SHOX2O60902 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC14.67□□□□□ -0.06
SHOX2O60902 HDAC7-203ENST00000380610 3261 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
SHOX2O60902 NR1H3-217ENST00000467728 2731 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SHOX2O60902 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC14.67□□□□□ -0.06
SHOX2O60902 MDM1-205ENST00000430606 2170 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SHOX2O60902 PPT1-204ENST00000439754 2195 ntTSL 3 BASIC14.67□□□□□ -0.06
SHOX2O60902 AC124319.4-201ENST00000622931 2161 ntBASIC14.67□□□□□ -0.06
SHOX2O60902 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SHOX2O60902 HSPA6-201ENST00000309758 2371 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
SHOX2O60902 AC108024.1-201ENST00000626286 1721 ntBASIC14.67□□□□□ -0.06
SHOX2O60902 PER1-202ENST00000354903 3115 ntTSL 2 BASIC14.67□□□□□ -0.06
SHOX2O60902 DRD2-210ENST00000544518 2473 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SHOX2O60902 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SHOX2O60902 POTEB3-201ENST00000611217 1813 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SHOX2O60902 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC14.67□□□□□ -0.06
SHOX2O60902 SMYD4-201ENST00000305513 4384 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SHOX2O60902 ADAM11-201ENST00000200557 4571 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SHOX2O60902 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SHOX2O60902 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
SHOX2O60902 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC14.67□□□□□ -0.06
SHOX2O60902 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SHOX2O60902 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC14.67□□□□□ -0.06
SHOX2O60902 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SHOX2O60902 AL355306.1-201ENST00000415580 579 ntBASIC14.67□□□□□ -0.06
SHOX2O60902 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC14.67□□□□□ -0.06
SHOX2O60902 AL671277.1-201ENST00000429656 993 ntBASIC14.67□□□□□ -0.06
SHOX2O60902 AK2P2-201ENST00000439142 405 ntBASIC14.67□□□□□ -0.06
SHOX2O60902 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC14.67□□□□□ -0.06
SHOX2O60902 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SHOX2O60902 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC14.67□□□□□ -0.06
SHOX2O60902 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
SHOX2O60902 AC105021.1-202ENST00000570572 669 ntBASIC14.67□□□□□ -0.06
SHOX2O60902 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC14.67□□□□□ -0.06
SHOX2O60902 ZNF124-202ENST00000472531 2243 ntTSL 2 BASIC14.67□□□□□ -0.06
SHOX2O60902 C12orf76-205ENST00000548191 2204 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
SHOX2O60902 TVP23A-201ENST00000299866 3360 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
SHOX2O60902 AC016738.1-201ENST00000452364 3485 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SHOX2O60902 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SHOX2O60902 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SHOX2O60902 HNRNPMP1-201ENST00000560685 1768 ntBASIC14.67□□□□□ -0.06
SHOX2O60902 TRMT61A-202ENST00000389749 3229 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SHOX2O60902 LPO-204ENST00000543544 2350 ntTSL 2 BASIC14.67□□□□□ -0.06
SHOX2O60902 DLX1-201ENST00000341900 2130 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SHOX2O60902 SLC25A35-203ENST00000579192 2136 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SHOX2O60902 AC102953.2-201ENST00000609755 3026 ntBASIC14.66□□□□□ -0.06
SHOX2O60902 CCDC142-202ENST00000393965 3406 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHOX2O60902 EGFR-207ENST00000455089 3844 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SHOX2O60902 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHOX2O60902 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHOX2O60902 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC14.66□□□□□ -0.06
SHOX2O60902 PPT1-203ENST00000433473 2267 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHOX2O60902 PAK3-211ENST00000518291 2098 ntTSL 5 BASIC14.66□□□□□ -0.06
SHOX2O60902 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHOX2O60902 TNNI1-201ENST00000336092 1750 ntAPPRIS P2 TSL 5 BASIC14.66□□□□□ -0.06
SHOX2O60902 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHOX2O60902 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHOX2O60902 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC14.66□□□□□ -0.06
SHOX2O60902 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHOX2O60902 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHOX2O60902 LIPE-201ENST00000244289 3813 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHOX2O60902 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHOX2O60902 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
SHOX2O60902 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
SHOX2O60902 PTMS-202ENST00000389462 773 ntTSL 2 BASIC14.66□□□□□ -0.06
SHOX2O60902 AC023274.1-201ENST00000418278 595 ntBASIC14.66□□□□□ -0.06
SHOX2O60902 AL590627.1-203ENST00000421194 1026 ntBASIC14.66□□□□□ -0.06
SHOX2O60902 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC14.66□□□□□ -0.06
SHOX2O60902 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC14.66□□□□□ -0.06
SHOX2O60902 GAPDHP40-201ENST00000505218 1006 ntBASIC14.66□□□□□ -0.06
SHOX2O60902 RNA5SP416-201ENST00000516838 111 ntBASIC14.66□□□□□ -0.06
SHOX2O60902 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC14.66□□□□□ -0.06
SHOX2O60902 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC14.66□□□□□ -0.06
SHOX2O60902 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SHOX2O60902 LINC01225-203ENST00000563550 1244 ntBASIC14.66□□□□□ -0.06
SHOX2O60902 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC14.66□□□□□ -0.06
SHOX2O60902 AC140113.2-201ENST00000604370 208 ntBASIC14.66□□□□□ -0.06
SHOX2O60902 GPR107-208ENST00000610997 2813 ntTSL 5 BASIC14.66□□□□□ -0.06
SHOX2O60902 KDM2B-202ENST00000377071 4595 ntAPPRIS P4 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHOX2O60902 UBE2W-201ENST00000419880 2315 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SHOX2O60902 PLEKHG2-206ENST00000458508 3898 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
SHOX2O60902 ITGA3-201ENST00000007722 3665 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
SHOX2O60902 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHOX2O60902 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
SHOX2O60902 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHOX2O60902 HSPA2-201ENST00000247207 2767 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
SHOX2O60902 KLC4-203ENST00000394056 2770 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
SHOX2O60902 SPAG8-202ENST00000396638 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms