Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC18.5■□□□□ 0.55
NPHP1O15259 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
NPHP1O15259 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
NPHP1O15259 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC18.5■□□□□ 0.55
NPHP1O15259 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
NPHP1O15259 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
NPHP1O15259 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
NPHP1O15259 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
NPHP1O15259 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
NPHP1O15259 STRN-202ENST00000379213 2254 ntTSL 5 BASIC18.49■□□□□ 0.55
NPHP1O15259 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
NPHP1O15259 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC18.49■□□□□ 0.55
NPHP1O15259 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC18.49■□□□□ 0.55
NPHP1O15259 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
NPHP1O15259 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
NPHP1O15259 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC18.49■□□□□ 0.55
NPHP1O15259 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
NPHP1O15259 AC025271.4-201ENST00000621477 1726 ntBASIC18.49■□□□□ 0.55
NPHP1O15259 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
NPHP1O15259 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
NPHP1O15259 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
NPHP1O15259 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
NPHP1O15259 AC023090.2-201ENST00000625182 2110 ntBASIC18.49■□□□□ 0.55
NPHP1O15259 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC18.49■□□□□ 0.55
NPHP1O15259 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
NPHP1O15259 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC18.49■□□□□ 0.55
NPHP1O15259 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
NPHP1O15259 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
NPHP1O15259 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
NPHP1O15259 Z69890.1-201ENST00000382990 339 ntBASIC18.49■□□□□ 0.55
NPHP1O15259 FOS-204ENST00000554617 796 ntTSL 2 BASIC18.49■□□□□ 0.55
NPHP1O15259 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC18.49■□□□□ 0.55
NPHP1O15259 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
NPHP1O15259 AC087392.5-201ENST00000612517 489 ntBASIC18.49■□□□□ 0.55
NPHP1O15259 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
NPHP1O15259 ACOX1-201ENST00000293217 7514 ntAPPRIS P5 TSL 1 (best) BASIC18.49■□□□□ 0.55
NPHP1O15259 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
NPHP1O15259 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC18.49■□□□□ 0.55
NPHP1O15259 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC18.49■□□□□ 0.55
NPHP1O15259 SEZ6L-203ENST00000360929 6307 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
NPHP1O15259 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC18.49■□□□□ 0.55
NPHP1O15259 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
NPHP1O15259 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
NPHP1O15259 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC18.48■□□□□ 0.55
NPHP1O15259 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
NPHP1O15259 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
NPHP1O15259 AC092384.3-202ENST00000564646 2873 ntBASIC18.48■□□□□ 0.55
NPHP1O15259 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
NPHP1O15259 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
NPHP1O15259 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC18.48■□□□□ 0.55
NPHP1O15259 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
NPHP1O15259 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
NPHP1O15259 AL365203.3-201ENST00000609742 2057 ntBASIC18.48■□□□□ 0.55
NPHP1O15259 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
NPHP1O15259 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
NPHP1O15259 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC18.48■□□□□ 0.55
NPHP1O15259 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
NPHP1O15259 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
NPHP1O15259 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
NPHP1O15259 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
NPHP1O15259 PFN2-202ENST00000423691 911 ntTSL 2 BASIC18.48■□□□□ 0.55
NPHP1O15259 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC18.48■□□□□ 0.55
NPHP1O15259 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
NPHP1O15259 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC18.48■□□□□ 0.55
NPHP1O15259 ALG3P1-201ENST00000508806 1114 ntBASIC18.48■□□□□ 0.55
NPHP1O15259 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
NPHP1O15259 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC18.48■□□□□ 0.55
NPHP1O15259 AC093752.3-201ENST00000567343 901 ntBASIC18.48■□□□□ 0.55
NPHP1O15259 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
NPHP1O15259 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC18.48■□□□□ 0.55
NPHP1O15259 SRSF3-208ENST00000620941 869 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
NPHP1O15259 AC092299.1-201ENST00000632679 757 ntBASIC18.48■□□□□ 0.55
NPHP1O15259 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
NPHP1O15259 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC18.48■□□□□ 0.55
NPHP1O15259 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
NPHP1O15259 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
NPHP1O15259 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
NPHP1O15259 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
NPHP1O15259 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
NPHP1O15259 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC18.48■□□□□ 0.55
NPHP1O15259 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
NPHP1O15259 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
NPHP1O15259 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
NPHP1O15259 AP000845.1-201ENST00000581677 2131 ntBASIC18.47■□□□□ 0.55
NPHP1O15259 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
NPHP1O15259 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC18.47■□□□□ 0.55
NPHP1O15259 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC18.47■□□□□ 0.55
NPHP1O15259 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
NPHP1O15259 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
NPHP1O15259 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
NPHP1O15259 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC18.47■□□□□ 0.55
NPHP1O15259 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
NPHP1O15259 AL645933.1-201ENST00000440087 609 ntBASIC18.47■□□□□ 0.55
NPHP1O15259 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC18.47■□□□□ 0.55
NPHP1O15259 BUD31-205ENST00000456893 512 ntTSL 5 BASIC18.47■□□□□ 0.55
NPHP1O15259 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC18.47■□□□□ 0.55
NPHP1O15259 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC18.47■□□□□ 0.55
NPHP1O15259 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC18.47■□□□□ 0.55
NPHP1O15259 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC18.47■□□□□ 0.55
NPHP1O15259 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms