Protein–RNA interactions for Protein: Q9P219

CCDC88C, Protein Daple, humanhuman

Predictions only

Length 2,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88CQ9P219 AC136759.1-202ENST00000530858 2194 ntBASIC14.01□□□□□ -0.17
CCDC88CQ9P219 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC14.01□□□□□ -0.17
CCDC88CQ9P219 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC14.01□□□□□ -0.17
CCDC88CQ9P219 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC88CQ9P219 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC88CQ9P219 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
CCDC88CQ9P219 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC88CQ9P219 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC88CQ9P219 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC88CQ9P219 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC14.01□□□□□ -0.17
CCDC88CQ9P219 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC14.01□□□□□ -0.17
CCDC88CQ9P219 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC88CQ9P219 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC88CQ9P219 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC14.01□□□□□ -0.17
CCDC88CQ9P219 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC88CQ9P219 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC88CQ9P219 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC88CQ9P219 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
CCDC88CQ9P219 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC88CQ9P219 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC88CQ9P219 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC88CQ9P219 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC88CQ9P219 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC88CQ9P219 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC14.01□□□□□ -0.17
CCDC88CQ9P219 TLE1P1-201ENST00000422965 589 ntBASIC14.01□□□□□ -0.17
CCDC88CQ9P219 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC14.01□□□□□ -0.17
CCDC88CQ9P219 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC14.01□□□□□ -0.17
CCDC88CQ9P219 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC14.01□□□□□ -0.17
CCDC88CQ9P219 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC14.01□□□□□ -0.17
CCDC88CQ9P219 RHOQP1-201ENST00000555758 579 ntBASIC14.01□□□□□ -0.17
CCDC88CQ9P219 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC14.01□□□□□ -0.17
CCDC88CQ9P219 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC14.01□□□□□ -0.17
CCDC88CQ9P219 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
CCDC88CQ9P219 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC88CQ9P219 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC88CQ9P219 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC88CQ9P219 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC88CQ9P219 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC14.01□□□□□ -0.17
CCDC88CQ9P219 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
CCDC88CQ9P219 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC88CQ9P219 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC88CQ9P219 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC14□□□□□ -0.17
CCDC88CQ9P219 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC14□□□□□ -0.17
CCDC88CQ9P219 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
CCDC88CQ9P219 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC88CQ9P219 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC14□□□□□ -0.17
CCDC88CQ9P219 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC14□□□□□ -0.17
CCDC88CQ9P219 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC14□□□□□ -0.17
CCDC88CQ9P219 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC88CQ9P219 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC88CQ9P219 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC14□□□□□ -0.17
CCDC88CQ9P219 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC14□□□□□ -0.17
CCDC88CQ9P219 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC14□□□□□ -0.17
CCDC88CQ9P219 PGGT1BP2-201ENST00000398621 1028 ntBASIC14□□□□□ -0.17
CCDC88CQ9P219 PDIA3P2-201ENST00000428073 158 ntBASIC14□□□□□ -0.17
CCDC88CQ9P219 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC14□□□□□ -0.17
CCDC88CQ9P219 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC14□□□□□ -0.17
CCDC88CQ9P219 MARK2P5-201ENST00000507649 634 ntBASIC14□□□□□ -0.17
CCDC88CQ9P219 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC14□□□□□ -0.17
CCDC88CQ9P219 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC14□□□□□ -0.17
CCDC88CQ9P219 AC023310.1-201ENST00000554836 735 ntBASIC14□□□□□ -0.17
CCDC88CQ9P219 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC14□□□□□ -0.17
CCDC88CQ9P219 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC14□□□□□ -0.17
CCDC88CQ9P219 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC14□□□□□ -0.17
CCDC88CQ9P219 AL354702.1-201ENST00000442006 1960 ntBASIC14□□□□□ -0.17
CCDC88CQ9P219 MPI-203ENST00000535694 1523 ntTSL 2 BASIC14□□□□□ -0.17
CCDC88CQ9P219 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC14□□□□□ -0.17
CCDC88CQ9P219 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
CCDC88CQ9P219 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC88CQ9P219 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC14□□□□□ -0.17
CCDC88CQ9P219 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC14□□□□□ -0.17
CCDC88CQ9P219 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC88CQ9P219 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC88CQ9P219 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC88CQ9P219 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC14□□□□□ -0.17
CCDC88CQ9P219 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC14□□□□□ -0.17
CCDC88CQ9P219 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC14□□□□□ -0.17
CCDC88CQ9P219 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC14□□□□□ -0.17
CCDC88CQ9P219 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC88CQ9P219 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC14□□□□□ -0.17
CCDC88CQ9P219 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC14□□□□□ -0.17
CCDC88CQ9P219 CICP16-201ENST00000502609 2813 ntBASIC14□□□□□ -0.17
CCDC88CQ9P219 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC14□□□□□ -0.17
CCDC88CQ9P219 SYNGAP1-208ENST00000629380 9862 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
CCDC88CQ9P219 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC88CQ9P219 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC88CQ9P219 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC88CQ9P219 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC88CQ9P219 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC14□□□□□ -0.17
CCDC88CQ9P219 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC14□□□□□ -0.17
CCDC88CQ9P219 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC88CQ9P219 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC14□□□□□ -0.17
CCDC88CQ9P219 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC14□□□□□ -0.17
CCDC88CQ9P219 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC14□□□□□ -0.17
CCDC88CQ9P219 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC14□□□□□ -0.17
CCDC88CQ9P219 SPTLC1P5-201ENST00000450718 252 ntBASIC14□□□□□ -0.17
CCDC88CQ9P219 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC14□□□□□ -0.17
CCDC88CQ9P219 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC14□□□□□ -0.17
CCDC88CQ9P219 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC88CQ9P219 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC14□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 64.1 ms