Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
COL12A1Q99715 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL12A1Q99715 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
COL12A1Q99715 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL12A1Q99715 BCKDHA-202ENST00000457836 1745 ntTSL 2 BASIC12.47□□□□□ -0.41
COL12A1Q99715 LILRP1-201ENST00000444199 1370 ntBASIC12.47□□□□□ -0.41
COL12A1Q99715 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
COL12A1Q99715 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
COL12A1Q99715 LXN-201ENST00000264265 1116 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL12A1Q99715 PDE4DIP-202ENST00000369347 1137 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
COL12A1Q99715 WDR54-202ENST00000409791 854 ntTSL 3 BASIC12.47□□□□□ -0.41
COL12A1Q99715 PSAT1P2-201ENST00000426107 972 ntBASIC12.47□□□□□ -0.41
COL12A1Q99715 LINC00399-201ENST00000439008 414 ntTSL 2 BASIC12.47□□□□□ -0.41
COL12A1Q99715 RAI1-AS1-201ENST00000443696 724 ntTSL 5 BASIC12.47□□□□□ -0.41
COL12A1Q99715 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL12A1Q99715 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
COL12A1Q99715 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
COL12A1Q99715 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
COL12A1Q99715 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
COL12A1Q99715 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL12A1Q99715 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC12.47□□□□□ -0.41
COL12A1Q99715 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL12A1Q99715 C17orf80-202ENST00000268942 3449 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL12A1Q99715 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
COL12A1Q99715 RPAIN-202ENST00000381208 1394 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
COL12A1Q99715 SHISA5-206ENST00000426002 1839 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
COL12A1Q99715 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC12.46□□□□□ -0.41
COL12A1Q99715 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
COL12A1Q99715 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC12.46□□□□□ -0.41
COL12A1Q99715 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
COL12A1Q99715 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC12.46□□□□□ -0.41
COL12A1Q99715 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC12.46□□□□□ -0.41
COL12A1Q99715 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
COL12A1Q99715 TAMM41-201ENST00000273037 1297 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
COL12A1Q99715 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC12.46□□□□□ -0.41
COL12A1Q99715 GLRX2-202ENST00000367440 1131 ntAPPRIS P4 TSL 1 (best) BASIC12.46□□□□□ -0.41
COL12A1Q99715 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.41
COL12A1Q99715 RPL18AP16-201ENST00000424057 531 ntBASIC12.46□□□□□ -0.41
COL12A1Q99715 NRADDP-201ENST00000437305 691 ntBASIC12.46□□□□□ -0.41
COL12A1Q99715 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
COL12A1Q99715 TAC3-209ENST00000458521 816 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
COL12A1Q99715 CAP2-207ENST00000493172 861 ntTSL 2 BASIC12.46□□□□□ -0.41
COL12A1Q99715 CR936218.2-201ENST00000574252 759 ntTSL 3 BASIC12.46□□□□□ -0.41
COL12A1Q99715 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
COL12A1Q99715 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC12.46□□□□□ -0.41
COL12A1Q99715 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
COL12A1Q99715 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
COL12A1Q99715 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC12.46□□□□□ -0.41
COL12A1Q99715 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC12.46□□□□□ -0.41
COL12A1Q99715 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
COL12A1Q99715 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC12.46□□□□□ -0.41
COL12A1Q99715 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
COL12A1Q99715 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
COL12A1Q99715 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC12.46□□□□□ -0.41
COL12A1Q99715 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC12.46□□□□□ -0.41
COL12A1Q99715 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC12.46□□□□□ -0.41
COL12A1Q99715 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
COL12A1Q99715 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.41
COL12A1Q99715 AL450346.2-201ENST00000495602 1024 ntBASIC12.46□□□□□ -0.41
COL12A1Q99715 TNNI1-205ENST00000555948 580 ntTSL 5 BASIC12.46□□□□□ -0.41
COL12A1Q99715 CDC37P2-201ENST00000562287 1029 ntBASIC12.46□□□□□ -0.41
COL12A1Q99715 CCDC32-215ENST00000625629 801 ntTSL 5 BASIC12.46□□□□□ -0.41
COL12A1Q99715 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
COL12A1Q99715 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
COL12A1Q99715 LINC02486-201ENST00000604157 3000 ntBASIC12.46□□□□□ -0.41
COL12A1Q99715 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
COL12A1Q99715 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
COL12A1Q99715 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
COL12A1Q99715 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
COL12A1Q99715 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
COL12A1Q99715 PRL-201ENST00000306482 1354 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
COL12A1Q99715 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC12.46□□□□□ -0.42
COL12A1Q99715 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
COL12A1Q99715 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
COL12A1Q99715 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
COL12A1Q99715 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
COL12A1Q99715 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
COL12A1Q99715 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
COL12A1Q99715 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
COL12A1Q99715 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC12.46□□□□□ -0.42
COL12A1Q99715 SNRPCP15-201ENST00000424055 192 ntBASIC12.46□□□□□ -0.42
COL12A1Q99715 RN7SL788P-201ENST00000460504 316 ntBASIC12.46□□□□□ -0.42
COL12A1Q99715 AP003031.2-205ENST00000531263 683 ntTSL 2 BASIC12.46□□□□□ -0.42
COL12A1Q99715 AC003688.2-201ENST00000576271 415 ntTSL 3 BASIC12.46□□□□□ -0.42
COL12A1Q99715 AC132812.1-201ENST00000583145 892 ntBASIC12.46□□□□□ -0.42
COL12A1Q99715 AL080250.1-203ENST00000607799 747 ntTSL 2 BASIC12.46□□□□□ -0.42
COL12A1Q99715 AL590556.2-202ENST00000636906 844 ntBASIC12.46□□□□□ -0.42
COL12A1Q99715 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
COL12A1Q99715 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
COL12A1Q99715 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
COL12A1Q99715 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC12.45□□□□□ -0.42
COL12A1Q99715 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
COL12A1Q99715 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL12A1Q99715 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
COL12A1Q99715 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC12.45□□□□□ -0.42
COL12A1Q99715 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC12.45□□□□□ -0.42
COL12A1Q99715 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC12.45□□□□□ -0.42
COL12A1Q99715 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC12.45□□□□□ -0.42
COL12A1Q99715 SMIM4-201ENST00000307106 274 ntTSL 2 BASIC12.45□□□□□ -0.42
COL12A1Q99715 LINC00265-2P-201ENST00000413372 782 ntBASIC12.45□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms