Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
NPHP3Q7Z494 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
NPHP3Q7Z494 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
NPHP3Q7Z494 RPF1-201ENST00000370654 1385 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
NPHP3Q7Z494 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
NPHP3Q7Z494 FKBP4P8-201ENST00000610931 1369 ntBASIC19.5■□□□□ 0.71
NPHP3Q7Z494 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
NPHP3Q7Z494 GALP-201ENST00000357330 938 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
NPHP3Q7Z494 LST1-204ENST00000376086 554 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
NPHP3Q7Z494 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC19.5■□□□□ 0.71
NPHP3Q7Z494 RNLS-203ENST00000437752 525 ntTSL 2 BASIC19.5■□□□□ 0.71
NPHP3Q7Z494 GALP-202ENST00000440823 889 ntTSL 5 BASIC19.5■□□□□ 0.71
NPHP3Q7Z494 AL157392.3-204ENST00000440878 397 ntTSL 3 BASIC19.5■□□□□ 0.71
NPHP3Q7Z494 AC025186.1-201ENST00000478174 870 ntBASIC19.5■□□□□ 0.71
NPHP3Q7Z494 AADACL2-AS1-202ENST00000483843 628 ntTSL 5 BASIC19.5■□□□□ 0.71
NPHP3Q7Z494 PRSS3P1-201ENST00000503996 742 ntBASIC19.5■□□□□ 0.71
NPHP3Q7Z494 AC005740.1-201ENST00000515639 522 ntBASIC19.5■□□□□ 0.71
NPHP3Q7Z494 AL132994.1-201ENST00000554098 400 ntBASIC19.5■□□□□ 0.71
NPHP3Q7Z494 DLK1-205ENST00000556051 469 ntTSL 2 BASIC19.5■□□□□ 0.71
NPHP3Q7Z494 LINC02252-201ENST00000565706 487 ntTSL 3 BASIC19.5■□□□□ 0.71
NPHP3Q7Z494 CES1P2-201ENST00000566467 1242 ntBASIC19.5■□□□□ 0.71
NPHP3Q7Z494 COQ4-204ENST00000608951 781 ntTSL 2 BASIC19.5■□□□□ 0.71
NPHP3Q7Z494 IDH3A-224ENST00000629769 114 ntTSL 5 BASIC19.5■□□□□ 0.71
NPHP3Q7Z494 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
NPHP3Q7Z494 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
NPHP3Q7Z494 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
NPHP3Q7Z494 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
NPHP3Q7Z494 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC19.49■□□□□ 0.71
NPHP3Q7Z494 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC19.49■□□□□ 0.71
NPHP3Q7Z494 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
NPHP3Q7Z494 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
NPHP3Q7Z494 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
NPHP3Q7Z494 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
NPHP3Q7Z494 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
NPHP3Q7Z494 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
NPHP3Q7Z494 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
NPHP3Q7Z494 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
NPHP3Q7Z494 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC19.49■□□□□ 0.71
NPHP3Q7Z494 AGK-211ENST00000629555 2765 ntTSL 5 BASIC19.49■□□□□ 0.71
NPHP3Q7Z494 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
NPHP3Q7Z494 AC106707.1-201ENST00000475981 1640 ntTSL 2 BASIC19.49■□□□□ 0.71
NPHP3Q7Z494 PGLYRP3-201ENST00000290722 1173 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
NPHP3Q7Z494 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC19.49■□□□□ 0.71
NPHP3Q7Z494 WASIR1-201ENST00000399966 1054 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
NPHP3Q7Z494 SIX3-AS1-201ENST00000419364 844 ntTSL 2 BASIC19.49■□□□□ 0.71
NPHP3Q7Z494 AC004895.1-203ENST00000428901 540 ntTSL 4 BASIC19.49■□□□□ 0.71
NPHP3Q7Z494 AC093609.1-201ENST00000434020 952 ntTSL 2 BASIC19.49■□□□□ 0.71
NPHP3Q7Z494 AP001057.1-201ENST00000437557 799 ntTSL 5 BASIC19.49■□□□□ 0.71
NPHP3Q7Z494 KRT18P62-201ENST00000446618 1287 ntBASIC19.49■□□□□ 0.71
NPHP3Q7Z494 CITED1-209ENST00000453707 998 ntAPPRIS ALT2 TSL 3 BASIC19.49■□□□□ 0.71
NPHP3Q7Z494 RN7SL147P-201ENST00000487345 298 ntBASIC19.49■□□□□ 0.71
NPHP3Q7Z494 EEF1GP8-201ENST00000506566 1154 ntBASIC19.49■□□□□ 0.71
NPHP3Q7Z494 AC090152.1-203ENST00000517898 1106 ntTSL 2 BASIC19.49■□□□□ 0.71
NPHP3Q7Z494 AC023968.2-201ENST00000560593 1049 ntBASIC19.49■□□□□ 0.71
NPHP3Q7Z494 MIR4265-201ENST00000582152 99 ntBASIC19.49■□□□□ 0.71
NPHP3Q7Z494 AC017033.1-201ENST00000603720 708 ntTSL 2 BASIC19.49■□□□□ 0.71
NPHP3Q7Z494 AP000357.2-201ENST00000633827 597 ntTSL 2 BASIC19.49■□□□□ 0.71
NPHP3Q7Z494 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
NPHP3Q7Z494 OXSM-201ENST00000280701 1519 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
NPHP3Q7Z494 KRT8P18-201ENST00000413425 1445 ntBASIC19.48■□□□□ 0.71
NPHP3Q7Z494 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
NPHP3Q7Z494 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC19.48■□□□□ 0.71
NPHP3Q7Z494 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
NPHP3Q7Z494 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC19.48■□□□□ 0.71
NPHP3Q7Z494 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
NPHP3Q7Z494 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
NPHP3Q7Z494 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
NPHP3Q7Z494 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
NPHP3Q7Z494 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
NPHP3Q7Z494 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
NPHP3Q7Z494 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC19.48■□□□□ 0.71
NPHP3Q7Z494 CROCCP1-201ENST00000426910 5675 ntBASIC19.48■□□□□ 0.71
NPHP3Q7Z494 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC19.48■□□□□ 0.71
NPHP3Q7Z494 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
NPHP3Q7Z494 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC19.48■□□□□ 0.71
NPHP3Q7Z494 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC19.48■□□□□ 0.71
NPHP3Q7Z494 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
NPHP3Q7Z494 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
NPHP3Q7Z494 CTSV-201ENST00000259470 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
NPHP3Q7Z494 LUC7L2-208ENST00000541170 1525 ntTSL 2 BASIC19.48■□□□□ 0.71
NPHP3Q7Z494 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
NPHP3Q7Z494 AC008741.2-201ENST00000612792 3115 ntBASIC19.48■□□□□ 0.71
NPHP3Q7Z494 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
NPHP3Q7Z494 OPN1SW-201ENST00000249389 1096 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
NPHP3Q7Z494 HPGD-201ENST00000296521 1171 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
NPHP3Q7Z494 AC106827.1-201ENST00000366454 431 ntBASIC19.48■□□□□ 0.71
NPHP3Q7Z494 TEX33-201ENST00000381821 978 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
NPHP3Q7Z494 S100A13-203ENST00000392623 579 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
NPHP3Q7Z494 COLEC11-204ENST00000402794 1134 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
NPHP3Q7Z494 AC092573.1-201ENST00000433054 884 ntBASIC19.48■□□□□ 0.71
NPHP3Q7Z494 IFI35-204ENST00000438323 1232 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
NPHP3Q7Z494 AC117945.1-201ENST00000451375 463 ntTSL 3 BASIC19.48■□□□□ 0.71
NPHP3Q7Z494 AC068057.1-201ENST00000453322 709 ntTSL 2 BASIC19.48■□□□□ 0.71
NPHP3Q7Z494 TMEM14B-208ENST00000467317 1224 ntTSL 2 BASIC19.48■□□□□ 0.71
NPHP3Q7Z494 C21orf62-204ENST00000490358 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
NPHP3Q7Z494 RN7SKP155-201ENST00000516031 288 ntBASIC19.48■□□□□ 0.71
NPHP3Q7Z494 AC087620.1-201ENST00000520037 447 ntTSL 3 BASIC19.48■□□□□ 0.71
NPHP3Q7Z494 ADM-203ENST00000525063 867 ntAPPRIS P1 TSL 3 BASIC19.48■□□□□ 0.71
NPHP3Q7Z494 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
NPHP3Q7Z494 C10orf113-201ENST00000529198 614 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 71.8 ms