Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 HNRNPA1P32-201ENST00000396326 963 ntBASIC13.61□□□□□ -0.23
RNF4P78317 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
RNF4P78317 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC13.61□□□□□ -0.23
RNF4P78317 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC13.61□□□□□ -0.23
RNF4P78317 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC13.61□□□□□ -0.23
RNF4P78317 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC13.61□□□□□ -0.23
RNF4P78317 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC13.61□□□□□ -0.23
RNF4P78317 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC13.61□□□□□ -0.23
RNF4P78317 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
RNF4P78317 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC13.61□□□□□ -0.23
RNF4P78317 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC13.61□□□□□ -0.23
RNF4P78317 NKG7-204ENST00000595217 816 ntTSL 2 BASIC13.61□□□□□ -0.23
RNF4P78317 AC022748.3-201ENST00000621828 275 ntBASIC13.61□□□□□ -0.23
RNF4P78317 GPR182-203ENST00000622922 591 ntBASIC13.61□□□□□ -0.23
RNF4P78317 Z98259.2-201ENST00000641583 609 ntBASIC13.61□□□□□ -0.23
RNF4P78317 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC13.61□□□□□ -0.23
RNF4P78317 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
RNF4P78317 AC009093.10-201ENST00000641956 1442 ntBASIC13.61□□□□□ -0.23
RNF4P78317 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
RNF4P78317 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
RNF4P78317 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
RNF4P78317 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
RNF4P78317 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC13.61□□□□□ -0.23
RNF4P78317 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
RNF4P78317 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
RNF4P78317 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC13.61□□□□□ -0.23
RNF4P78317 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC13.61□□□□□ -0.23
RNF4P78317 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
RNF4P78317 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
RNF4P78317 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
RNF4P78317 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
RNF4P78317 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
RNF4P78317 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RNF4P78317 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
RNF4P78317 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RNF4P78317 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
RNF4P78317 NFATC1-205ENST00000427363 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
RNF4P78317 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
RNF4P78317 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
RNF4P78317 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
RNF4P78317 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC13.6□□□□□ -0.23
RNF4P78317 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC13.6□□□□□ -0.23
RNF4P78317 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
RNF4P78317 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
RNF4P78317 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC13.6□□□□□ -0.23
RNF4P78317 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
RNF4P78317 AC007686.3-201ENST00000619017 3487 ntBASIC13.6□□□□□ -0.23
RNF4P78317 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RNF4P78317 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RNF4P78317 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
RNF4P78317 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
RNF4P78317 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
RNF4P78317 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RNF4P78317 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
RNF4P78317 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC13.6□□□□□ -0.23
RNF4P78317 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
RNF4P78317 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
RNF4P78317 MIR1247-201ENST00000408206 136 ntBASIC13.6□□□□□ -0.23
RNF4P78317 AC004899.1-201ENST00000424687 1714 ntBASIC13.6□□□□□ -0.23
RNF4P78317 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC13.6□□□□□ -0.23
RNF4P78317 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC13.6□□□□□ -0.23
RNF4P78317 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC13.6□□□□□ -0.23
RNF4P78317 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC13.6□□□□□ -0.23
RNF4P78317 KRT8P13-201ENST00000463294 1010 ntBASIC13.6□□□□□ -0.23
RNF4P78317 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC13.6□□□□□ -0.23
RNF4P78317 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC13.6□□□□□ -0.23
RNF4P78317 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC13.6□□□□□ -0.23
RNF4P78317 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC13.6□□□□□ -0.23
RNF4P78317 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC13.6□□□□□ -0.23
RNF4P78317 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
RNF4P78317 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC13.6□□□□□ -0.23
RNF4P78317 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RNF4P78317 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
RNF4P78317 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
RNF4P78317 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RNF4P78317 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC13.6□□□□□ -0.23
RNF4P78317 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RNF4P78317 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RNF4P78317 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
RNF4P78317 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC13.6□□□□□ -0.23
RNF4P78317 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RNF4P78317 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RNF4P78317 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
RNF4P78317 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
RNF4P78317 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC13.6□□□□□ -0.23
RNF4P78317 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RNF4P78317 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
RNF4P78317 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
RNF4P78317 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
RNF4P78317 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
RNF4P78317 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
RNF4P78317 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC13.59□□□□□ -0.23
RNF4P78317 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
RNF4P78317 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
RNF4P78317 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
RNF4P78317 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC13.59□□□□□ -0.23
RNF4P78317 AL390755.1-201ENST00000623716 2027 ntBASIC13.59□□□□□ -0.23
RNF4P78317 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC13.59□□□□□ -0.23
RNF4P78317 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
RNF4P78317 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms