Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
VCPP55072 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
VCPP55072 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC15.78■□□□□ 0.12
VCPP55072 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
VCPP55072 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VCPP55072 AC139749.1-202ENST00000617529 3139 ntBASIC15.78■□□□□ 0.12
VCPP55072 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC15.78■□□□□ 0.12
VCPP55072 BX640514.1-201ENST00000583223 1918 ntBASIC15.78■□□□□ 0.12
VCPP55072 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
VCPP55072 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VCPP55072 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC15.78■□□□□ 0.12
VCPP55072 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VCPP55072 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC15.78■□□□□ 0.12
VCPP55072 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
VCPP55072 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC15.77■□□□□ 0.12
VCPP55072 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC15.77■□□□□ 0.12
VCPP55072 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC15.77■□□□□ 0.12
VCPP55072 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.12
VCPP55072 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
VCPP55072 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
VCPP55072 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
VCPP55072 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
VCPP55072 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
VCPP55072 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
VCPP55072 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
VCPP55072 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
VCPP55072 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC15.77■□□□□ 0.12
VCPP55072 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
VCPP55072 AL139094.1-201ENST00000405549 1188 ntBASIC15.77■□□□□ 0.12
VCPP55072 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC15.77■□□□□ 0.12
VCPP55072 AL008707.1-201ENST00000422498 534 ntBASIC15.77■□□□□ 0.12
VCPP55072 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC15.77■□□□□ 0.12
VCPP55072 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC15.77■□□□□ 0.12
VCPP55072 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC15.77■□□□□ 0.12
VCPP55072 AC012618.1-201ENST00000461223 412 ntBASIC15.77■□□□□ 0.12
VCPP55072 NPM1P43-201ENST00000558669 786 ntBASIC15.77■□□□□ 0.12
VCPP55072 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC15.77■□□□□ 0.12
VCPP55072 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.12
VCPP55072 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC15.77■□□□□ 0.12
VCPP55072 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC15.77■□□□□ 0.12
VCPP55072 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC15.77■□□□□ 0.12
VCPP55072 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
VCPP55072 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
VCPP55072 AC104581.4-201ENST00000623126 3052 ntBASIC15.77■□□□□ 0.11
VCPP55072 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
VCPP55072 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
VCPP55072 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
VCPP55072 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.11
VCPP55072 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
VCPP55072 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
VCPP55072 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
VCPP55072 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
VCPP55072 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
VCPP55072 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC15.77■□□□□ 0.11
VCPP55072 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC15.77■□□□□ 0.11
VCPP55072 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC15.77■□□□□ 0.11
VCPP55072 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
VCPP55072 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
VCPP55072 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VCPP55072 AL157414.3-201ENST00000624276 1954 ntBASIC15.76■□□□□ 0.11
VCPP55072 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VCPP55072 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
VCPP55072 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
VCPP55072 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VCPP55072 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
VCPP55072 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC15.76■□□□□ 0.11
VCPP55072 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
VCPP55072 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
VCPP55072 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
VCPP55072 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VCPP55072 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VCPP55072 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VCPP55072 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC15.76■□□□□ 0.11
VCPP55072 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VCPP55072 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
VCPP55072 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VCPP55072 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
VCPP55072 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC15.76■□□□□ 0.11
VCPP55072 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VCPP55072 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VCPP55072 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
VCPP55072 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
VCPP55072 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC15.76■□□□□ 0.11
VCPP55072 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC15.76■□□□□ 0.11
VCPP55072 AC098935.1-201ENST00000446057 611 ntBASIC15.76■□□□□ 0.11
VCPP55072 AC114812.1-204ENST00000449669 728 ntBASIC15.76■□□□□ 0.11
VCPP55072 FGFR3P1-201ENST00000449999 601 ntBASIC15.76■□□□□ 0.11
VCPP55072 AC125604.1-201ENST00000496255 707 ntBASIC15.76■□□□□ 0.11
VCPP55072 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC15.76■□□□□ 0.11
VCPP55072 AC022858.1-201ENST00000521685 685 ntTSL 3 BASIC15.76■□□□□ 0.11
VCPP55072 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC15.76■□□□□ 0.11
VCPP55072 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
VCPP55072 AC005730.2-201ENST00000564549 1184 ntBASIC15.76■□□□□ 0.11
VCPP55072 KLK11-210ENST00000600362 759 ntTSL 3 BASIC15.76■□□□□ 0.11
VCPP55072 MIR6756-201ENST00000616240 63 ntBASIC15.76■□□□□ 0.11
VCPP55072 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
VCPP55072 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VCPP55072 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VCPP55072 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
VCPP55072 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 61.5 ms