Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
COL4A5P29400 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL4A5P29400 MDM1-205ENST00000430606 2170 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL4A5P29400 CPA5-206ENST00000474905 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL4A5P29400 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC17.04■□□□□ 0.32
COL4A5P29400 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL4A5P29400 CERCAM-214ENST00000613052 1429 ntTSL 5 BASIC17.04■□□□□ 0.32
COL4A5P29400 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
COL4A5P29400 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL4A5P29400 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL4A5P29400 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL4A5P29400 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL4A5P29400 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
COL4A5P29400 IMMT-212ENST00000620815 1520 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL4A5P29400 ZNF691-201ENST00000372502 1910 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
COL4A5P29400 MT1H-201ENST00000332374 397 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL4A5P29400 TNNT2-207ENST00000367322 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL4A5P29400 HIST1H2APS2-201ENST00000454426 370 ntBASIC17.04■□□□□ 0.32
COL4A5P29400 WNT5A-205ENST00000497027 1299 ntTSL 2 BASIC17.04■□□□□ 0.32
COL4A5P29400 AC025171.3-201ENST00000509036 472 ntTSL 2 BASIC17.04■□□□□ 0.32
COL4A5P29400 RBM4-211ENST00000530235 1011 ntTSL 3 BASIC17.04■□□□□ 0.32
COL4A5P29400 AC073896.4-201ENST00000553176 403 ntTSL 2 BASIC17.04■□□□□ 0.32
COL4A5P29400 AC074050.2-201ENST00000563338 538 ntTSL 3 BASIC17.04■□□□□ 0.32
COL4A5P29400 SLC9A3R2-204ENST00000563587 1037 ntTSL 2 BASIC17.04■□□□□ 0.32
COL4A5P29400 AC006116.2-201ENST00000589958 988 ntBASIC17.04■□□□□ 0.32
COL4A5P29400 SMAD7-208ENST00000591805 1152 ntTSL 2 BASIC17.04■□□□□ 0.32
COL4A5P29400 BX322534.1-201ENST00000635574 241 ntBASIC17.04■□□□□ 0.32
COL4A5P29400 AC215524.1-201ENST00000635696 241 ntBASIC17.04■□□□□ 0.32
COL4A5P29400 GNG14-201ENST00000640117 210 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
COL4A5P29400 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL4A5P29400 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC17.03■□□□□ 0.32
COL4A5P29400 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
COL4A5P29400 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
COL4A5P29400 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL4A5P29400 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL4A5P29400 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
COL4A5P29400 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
COL4A5P29400 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
COL4A5P29400 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
COL4A5P29400 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
COL4A5P29400 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL4A5P29400 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL4A5P29400 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC17.03■□□□□ 0.32
COL4A5P29400 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL4A5P29400 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL4A5P29400 POLR2G-201ENST00000301788 827 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL4A5P29400 COX8A-201ENST00000314133 507 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL4A5P29400 NDUFB6-202ENST00000366466 761 ntTSL 2 BASIC17.03■□□□□ 0.32
COL4A5P29400 HNRNPA1P21-201ENST00000424115 961 ntBASIC17.03■□□□□ 0.32
COL4A5P29400 RN7SL351P-201ENST00000469306 248 ntBASIC17.03■□□□□ 0.32
COL4A5P29400 AC079414.2-201ENST00000567157 1104 ntBASIC17.03■□□□□ 0.32
COL4A5P29400 HNRNPA1P16-201ENST00000575692 955 ntBASIC17.03■□□□□ 0.32
COL4A5P29400 SNX11-210ENST00000582104 1282 ntTSL 2 BASIC17.03■□□□□ 0.32
COL4A5P29400 AL049840.2-201ENST00000602722 535 ntBASIC17.03■□□□□ 0.32
COL4A5P29400 AP000356.3-203ENST00000614808 601 ntTSL 3 BASIC17.03■□□□□ 0.32
COL4A5P29400 Metazoa_SRP.200-201ENST00000622073 282 ntBASIC17.03■□□□□ 0.32
COL4A5P29400 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
COL4A5P29400 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC17.03■□□□□ 0.32
COL4A5P29400 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
COL4A5P29400 CFAP36-204ENST00000406691 1575 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
COL4A5P29400 FADS1-206ENST00000460649 1559 ntTSL 2 BASIC17.03■□□□□ 0.32
COL4A5P29400 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC17.03■□□□□ 0.32
COL4A5P29400 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC17.02■□□□□ 0.32
COL4A5P29400 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL4A5P29400 MARS-233ENST00000628866 2583 ntTSL 5 BASIC17.02■□□□□ 0.32
COL4A5P29400 AC013268.4-201ENST00000637413 2228 ntBASIC17.02■□□□□ 0.32
COL4A5P29400 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
COL4A5P29400 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL4A5P29400 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
COL4A5P29400 AC011498.7-201ENST00000624986 2027 ntBASIC17.02■□□□□ 0.32
COL4A5P29400 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC17.02■□□□□ 0.32
COL4A5P29400 ATP5A1-215ENST00000590665 1793 ntTSL 2 BASIC17.02■□□□□ 0.32
COL4A5P29400 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC17.02■□□□□ 0.32
COL4A5P29400 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
COL4A5P29400 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL4A5P29400 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
COL4A5P29400 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL4A5P29400 NHP2P1-201ENST00000335274 462 ntBASIC17.02■□□□□ 0.32
COL4A5P29400 TSC22D3-202ENST00000372382 1216 ntTSL 3 BASIC17.02■□□□□ 0.32
COL4A5P29400 HCRTR1-201ENST00000373705 1170 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
COL4A5P29400 PILRA-205ENST00000453419 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL4A5P29400 PAQR9-AS1-203ENST00000497652 516 ntTSL 3 BASIC17.02■□□□□ 0.32
COL4A5P29400 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC17.02■□□□□ 0.32
COL4A5P29400 BLOC1S1-202ENST00000548556 525 ntTSL 2 BASIC17.02■□□□□ 0.32
COL4A5P29400 AC011489.1-201ENST00000586744 690 ntTSL 3 BASIC17.02■□□□□ 0.32
COL4A5P29400 AC093503.1-201ENST00000593888 495 ntTSL 3 BASIC17.02■□□□□ 0.32
COL4A5P29400 HIST1H3B-201ENST00000621411 411 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
COL4A5P29400 AC110057.1-201ENST00000636031 898 ntBASIC17.02■□□□□ 0.32
COL4A5P29400 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
COL4A5P29400 TMEM9B-202ENST00000525069 1433 ntTSL 2 BASIC17.02■□□□□ 0.32
COL4A5P29400 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL4A5P29400 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
COL4A5P29400 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
COL4A5P29400 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC17.02■□□□□ 0.31
COL4A5P29400 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
COL4A5P29400 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
COL4A5P29400 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
COL4A5P29400 GSN-215ENST00000545652 2428 ntTSL 2 BASIC17.02■□□□□ 0.31
COL4A5P29400 CICP6-201ENST00000457191 2729 ntBASIC17.02■□□□□ 0.31
COL4A5P29400 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms