Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
USF1P22415 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC12.52□□□□□ -0.41
USF1P22415 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC12.52□□□□□ -0.41
USF1P22415 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
USF1P22415 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC12.52□□□□□ -0.41
USF1P22415 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
USF1P22415 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC12.52□□□□□ -0.41
USF1P22415 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC12.52□□□□□ -0.41
USF1P22415 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
USF1P22415 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC12.52□□□□□ -0.41
USF1P22415 KIF1A-213ENST00000498729 9221 ntTSL 5 BASIC12.52□□□□□ -0.41
USF1P22415 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC12.51□□□□□ -0.41
USF1P22415 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
USF1P22415 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC12.51□□□□□ -0.41
USF1P22415 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
USF1P22415 AC104581.4-201ENST00000623126 3052 ntBASIC12.51□□□□□ -0.41
USF1P22415 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
USF1P22415 DISP3-201ENST00000294484 5215 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
USF1P22415 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
USF1P22415 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
USF1P22415 CICP4-201ENST00000447359 2812 ntBASIC12.51□□□□□ -0.41
USF1P22415 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
USF1P22415 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
USF1P22415 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC12.51□□□□□ -0.41
USF1P22415 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
USF1P22415 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
USF1P22415 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC12.51□□□□□ -0.41
USF1P22415 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
USF1P22415 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
USF1P22415 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
USF1P22415 MSRA-203ENST00000441698 788 ntTSL 2 BASIC12.51□□□□□ -0.41
USF1P22415 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC12.51□□□□□ -0.41
USF1P22415 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC12.51□□□□□ -0.41
USF1P22415 AC026434.2-201ENST00000506094 1078 ntBASIC12.51□□□□□ -0.41
USF1P22415 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC12.51□□□□□ -0.41
USF1P22415 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC12.51□□□□□ -0.41
USF1P22415 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC12.51□□□□□ -0.41
USF1P22415 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC12.51□□□□□ -0.41
USF1P22415 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC12.51□□□□□ -0.41
USF1P22415 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
USF1P22415 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
USF1P22415 AC004466.1-201ENST00000599515 1080 ntBASIC12.51□□□□□ -0.41
USF1P22415 BNIP3P13-201ENST00000599968 566 ntBASIC12.51□□□□□ -0.41
USF1P22415 AL645939.5-201ENST00000606834 243 ntBASIC12.51□□□□□ -0.41
USF1P22415 AC026740.1-201ENST00000607068 791 ntBASIC12.51□□□□□ -0.41
USF1P22415 AC022748.3-201ENST00000621828 275 ntBASIC12.51□□□□□ -0.41
USF1P22415 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
USF1P22415 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
USF1P22415 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC12.51□□□□□ -0.41
USF1P22415 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
USF1P22415 AL360270.3-201ENST00000609118 1348 ntBASIC12.51□□□□□ -0.41
USF1P22415 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC12.51□□□□□ -0.41
USF1P22415 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
USF1P22415 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC12.51□□□□□ -0.41
USF1P22415 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC12.51□□□□□ -0.41
USF1P22415 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC12.51□□□□□ -0.41
USF1P22415 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
USF1P22415 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC12.51□□□□□ -0.41
USF1P22415 MARS-233ENST00000628866 2583 ntTSL 5 BASIC12.51□□□□□ -0.41
USF1P22415 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
USF1P22415 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
USF1P22415 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC12.51□□□□□ -0.41
USF1P22415 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
USF1P22415 MCC-201ENST00000302475 8257 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
USF1P22415 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC12.51□□□□□ -0.41
USF1P22415 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
USF1P22415 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
USF1P22415 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
USF1P22415 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
USF1P22415 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
USF1P22415 AC023908.3-201ENST00000564211 3047 ntBASIC12.51□□□□□ -0.41
USF1P22415 SETD1B-202ENST00000542440 8185 ntAPPRIS P2 TSL 5 BASIC12.51□□□□□ -0.41
USF1P22415 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
USF1P22415 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
USF1P22415 ZBED1P1-201ENST00000502364 1930 ntBASIC12.5□□□□□ -0.41
USF1P22415 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
USF1P22415 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC12.5□□□□□ -0.41
USF1P22415 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
USF1P22415 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
USF1P22415 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC12.5□□□□□ -0.41
USF1P22415 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC12.5□□□□□ -0.41
USF1P22415 MROH2A-201ENST00000389758 5355 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
USF1P22415 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
USF1P22415 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
USF1P22415 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
USF1P22415 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
USF1P22415 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC12.5□□□□□ -0.41
USF1P22415 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
USF1P22415 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC12.5□□□□□ -0.41
USF1P22415 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
USF1P22415 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
USF1P22415 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
USF1P22415 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC12.5□□□□□ -0.41
USF1P22415 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
USF1P22415 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
USF1P22415 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
USF1P22415 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
USF1P22415 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC12.5□□□□□ -0.41
USF1P22415 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC12.5□□□□□ -0.41
USF1P22415 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC12.5□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 93.9 ms