Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
HLA-DOAP06340 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC17.2■□□□□ 0.34
HLA-DOAP06340 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HLA-DOAP06340 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HLA-DOAP06340 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HLA-DOAP06340 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC17.2■□□□□ 0.34
HLA-DOAP06340 AC026316.1-201ENST00000398900 414 ntBASIC17.2■□□□□ 0.34
HLA-DOAP06340 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HLA-DOAP06340 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HLA-DOAP06340 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC17.2■□□□□ 0.34
HLA-DOAP06340 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC17.2■□□□□ 0.34
HLA-DOAP06340 RPS2P36-201ENST00000456516 831 ntBASIC17.2■□□□□ 0.34
HLA-DOAP06340 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HLA-DOAP06340 RHEB-207ENST00000496004 744 ntTSL 2 BASIC17.2■□□□□ 0.34
HLA-DOAP06340 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HLA-DOAP06340 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC17.2■□□□□ 0.34
HLA-DOAP06340 MIR3677-201ENST00000578964 60 ntBASIC17.2■□□□□ 0.34
HLA-DOAP06340 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
HLA-DOAP06340 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC17.2■□□□□ 0.34
HLA-DOAP06340 AC007718.1-201ENST00000621078 280 ntBASIC17.2■□□□□ 0.34
HLA-DOAP06340 AC051619.9-201ENST00000623237 597 ntBASIC17.2■□□□□ 0.34
HLA-DOAP06340 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC17.2■□□□□ 0.34
HLA-DOAP06340 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HLA-DOAP06340 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC17.2■□□□□ 0.34
HLA-DOAP06340 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC17.2■□□□□ 0.34
HLA-DOAP06340 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
HLA-DOAP06340 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC17.2■□□□□ 0.34
HLA-DOAP06340 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC17.2■□□□□ 0.34
HLA-DOAP06340 MX1-218ENST00000619682 1980 ntTSL 5 BASIC17.2■□□□□ 0.34
HLA-DOAP06340 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
HLA-DOAP06340 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
HLA-DOAP06340 GPI-205ENST00000586425 1799 ntTSL 5 BASIC17.2■□□□□ 0.34
HLA-DOAP06340 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC17.2■□□□□ 0.34
HLA-DOAP06340 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HLA-DOAP06340 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC17.2■□□□□ 0.34
HLA-DOAP06340 OR2I1P-209ENST00000641730 5365 ntBASIC17.2■□□□□ 0.34
HLA-DOAP06340 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HLA-DOAP06340 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HLA-DOAP06340 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HLA-DOAP06340 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC17.19■□□□□ 0.34
HLA-DOAP06340 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HLA-DOAP06340 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HLA-DOAP06340 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC17.19■□□□□ 0.34
HLA-DOAP06340 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HLA-DOAP06340 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC17.19■□□□□ 0.34
HLA-DOAP06340 BANF1P3-201ENST00000412556 261 ntBASIC17.19■□□□□ 0.34
HLA-DOAP06340 AL592076.1-201ENST00000424448 303 ntBASIC17.19■□□□□ 0.34
HLA-DOAP06340 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HLA-DOAP06340 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC17.19■□□□□ 0.34
HLA-DOAP06340 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC17.19■□□□□ 0.34
HLA-DOAP06340 FGFR3P1-201ENST00000449999 601 ntBASIC17.19■□□□□ 0.34
HLA-DOAP06340 MPRIPP1-201ENST00000452433 1089 ntBASIC17.19■□□□□ 0.34
HLA-DOAP06340 DUX4L50-201ENST00000455245 715 ntBASIC17.19■□□□□ 0.34
HLA-DOAP06340 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC17.19■□□□□ 0.34
HLA-DOAP06340 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC17.19■□□□□ 0.34
HLA-DOAP06340 NEU3-205ENST00000531619 582 ntTSL 5 BASIC17.19■□□□□ 0.34
HLA-DOAP06340 AL591471.1-201ENST00000621855 229 ntBASIC17.19■□□□□ 0.34
HLA-DOAP06340 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HLA-DOAP06340 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
HLA-DOAP06340 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
HLA-DOAP06340 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
HLA-DOAP06340 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC17.19■□□□□ 0.34
HLA-DOAP06340 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HLA-DOAP06340 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC17.19■□□□□ 0.34
HLA-DOAP06340 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC17.19■□□□□ 0.34
HLA-DOAP06340 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
HLA-DOAP06340 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HLA-DOAP06340 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HLA-DOAP06340 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HLA-DOAP06340 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
HLA-DOAP06340 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC17.19■□□□□ 0.34
HLA-DOAP06340 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC17.19■□□□□ 0.34
HLA-DOAP06340 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HLA-DOAP06340 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HLA-DOAP06340 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
HLA-DOAP06340 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HLA-DOAP06340 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
HLA-DOAP06340 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
HLA-DOAP06340 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
HLA-DOAP06340 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
HLA-DOAP06340 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HLA-DOAP06340 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC17.18■□□□□ 0.34
HLA-DOAP06340 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HLA-DOAP06340 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
HLA-DOAP06340 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC17.18■□□□□ 0.34
HLA-DOAP06340 MARS-233ENST00000628866 2583 ntTSL 5 BASIC17.18■□□□□ 0.34
HLA-DOAP06340 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
HLA-DOAP06340 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HLA-DOAP06340 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC17.18■□□□□ 0.34
HLA-DOAP06340 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HLA-DOAP06340 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HLA-DOAP06340 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HLA-DOAP06340 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
HLA-DOAP06340 AL583805.1-201ENST00000391389 531 ntBASIC17.18■□□□□ 0.34
HLA-DOAP06340 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
HLA-DOAP06340 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC17.18■□□□□ 0.34
HLA-DOAP06340 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC17.18■□□□□ 0.34
HLA-DOAP06340 NOC2LP1-201ENST00000450578 752 ntBASIC17.18■□□□□ 0.34
HLA-DOAP06340 AP000358.1-201ENST00000456260 156 ntBASIC17.18■□□□□ 0.34
HLA-DOAP06340 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms