Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 CSF2RB-203ENST00000406230 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 AC107375.1-201ENST00000564464 2231 ntBASIC11.12□□□□□ -0.63
HLA-DQA1P01909 SNRK-201ENST00000296088 5183 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 TRIM26-267ENST00000453195 3318 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 ZBTB20-206ENST00000464560 2816 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 TNNI1-207ENST00000622580 6142 ntAPPRIS ALT1 TSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 ADGRA1-201ENST00000392606 3438 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 AL022323.5-201ENST00000624101 2059 ntBASIC11.12□□□□□ -0.63
HLA-DQA1P01909 APAF1-202ENST00000357310 7055 ntAPPRIS ALT1 TSL 5 BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 HSD17B4-201ENST00000256216 2683 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
HLA-DQA1P01909 PLEKHA7-202ENST00000355661 4980 ntAPPRIS P2 TSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 C10orf105-202ENST00000441508 4836 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 FIBCD1-204ENST00000448616 3119 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 PML-210ENST00000563500 4502 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 RAB37-205ENST00000392614 2704 ntAPPRIS ALT2 TSL 2 BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 EGR2-202ENST00000411732 2824 ntTSL 2 BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 ENO2-205ENST00000535366 2827 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 NEK4-202ENST00000383721 2576 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 HJURP-207ENST00000441687 2934 ntAPPRIS ALT2 TSL 2 BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 MSH5-202ENST00000375740 2669 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 KRT18P3-201ENST00000451602 1288 ntBASIC11.11□□□□□ -0.63
HLA-DQA1P01909 NMU-203ENST00000507338 658 ntTSL 3 BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 AC105233.2-201ENST00000523697 349 ntBASIC11.11□□□□□ -0.63
HLA-DQA1P01909 AF228730.5-201ENST00000530288 346 ntBASIC11.11□□□□□ -0.63
HLA-DQA1P01909 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 PIN1-206ENST00000587625 878 ntTSL 2 BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 AC004877.2-201ENST00000623941 599 ntBASIC11.11□□□□□ -0.63
HLA-DQA1P01909 SPTBN2-201ENST00000309996 7866 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 IFT88-202ENST00000351808 2856 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 STRIP2-202ENST00000435494 2866 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 MKL1-211ENST00000618196 4248 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 RNF43-205ENST00000581868 2610 ntTSL 2 BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 CCT3-204ENST00000368259 1815 ntTSL 2 BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 FLAD1-206ENST00000368432 1839 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 KCNIP1-208ENST00000520740 1845 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 LIX1L-201ENST00000604000 3975 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 SGK2-203ENST00000373092 1906 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 TRIT1-202ENST00000372818 2034 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 FAM224A-201ENST00000419557 2031 ntTSL 2 BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 TNPO2-218ENST00000592287 2914 ntAPPRIS P4 TSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 AMER3-202ENST00000423981 6172 ntAPPRIS P1 TSL 4 BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 FBXL18-201ENST00000382368 3498 ntAPPRIS P2 TSL 5 BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 TESMIN-204ENST00000443940 3495 ntTSL 2 BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 RERE-212ENST00000476556 4598 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 AFDN-206ENST00000392112 7459 ntTSL 5 BASIC11.11□□□□□ -0.63
HLA-DQA1P01909 ITGA5-201ENST00000293379 4444 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DQA1P01909 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DQA1P01909 DAB2IP-202ENST00000309989 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DQA1P01909 AC025580.3-201ENST00000617932 1424 ntBASIC11.1□□□□□ -0.63
HLA-DQA1P01909 GLRX3-202ENST00000368644 3827 ntAPPRIS P1 TSL 2 BASIC11.1□□□□□ -0.63
HLA-DQA1P01909 PLD1-201ENST00000331659 2906 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DQA1P01909 GOLGA2P5-201ENST00000266746 2395 ntBASIC11.1□□□□□ -0.63
HLA-DQA1P01909 ELN-222ENST00000458204 3147 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DQA1P01909 AC105345.1-202ENST00000382488 3204 ntTSL 2 BASIC11.1□□□□□ -0.63
HLA-DQA1P01909 NPAS4-201ENST00000311034 3303 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DQA1P01909 FAM201A-201ENST00000377680 3437 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DQA1P01909 SLC5A4-201ENST00000266086 2030 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DQA1P01909 LMAN2L-202ENST00000377079 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DQA1P01909 ARHGEF2-201ENST00000313667 2958 ntAPPRIS ALT1 TSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DQA1P01909 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DQA1P01909 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC11.1□□□□□ -0.63
HLA-DQA1P01909 TEX30-205ENST00000376029 959 ntTSL 2 BASIC11.1□□□□□ -0.63
HLA-DQA1P01909 AL391647.1-201ENST00000395664 511 ntBASIC11.1□□□□□ -0.63
HLA-DQA1P01909 DDT-204ENST00000404092 805 ntTSL 3 BASIC11.1□□□□□ -0.63
HLA-DQA1P01909 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC11.1□□□□□ -0.63
HLA-DQA1P01909 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC11.1□□□□□ -0.63
HLA-DQA1P01909 PLA2G4B-201ENST00000452633 2985 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
HLA-DQA1P01909 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC11.1□□□□□ -0.63
HLA-DQA1P01909 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
HLA-DQA1P01909 SUOX-214ENST00000551841 906 ntTSL 3 BASIC11.1□□□□□ -0.63
HLA-DQA1P01909 AC106730.1-201ENST00000566722 1090 ntBASIC11.1□□□□□ -0.63
HLA-DQA1P01909 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC11.1□□□□□ -0.63
HLA-DQA1P01909 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC11.1□□□□□ -0.63
HLA-DQA1P01909 UBL5-208ENST00000593087 320 ntTSL 3 BASIC11.1□□□□□ -0.63
HLA-DQA1P01909 AL161645.1-201ENST00000622716 1255 ntBASIC11.1□□□□□ -0.63
HLA-DQA1P01909 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC11.1□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms