Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC15.53■□□□□ 0.08
RTN3O95197 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
RTN3O95197 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
RTN3O95197 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC15.52■□□□□ 0.08
RTN3O95197 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
RTN3O95197 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
RTN3O95197 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC15.52■□□□□ 0.08
RTN3O95197 CICP23-201ENST00000605013 2741 ntBASIC15.52■□□□□ 0.08
RTN3O95197 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
RTN3O95197 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC15.52■□□□□ 0.08
RTN3O95197 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
RTN3O95197 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.08
RTN3O95197 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
RTN3O95197 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
RTN3O95197 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
RTN3O95197 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC15.52■□□□□ 0.08
RTN3O95197 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC15.52■□□□□ 0.08
RTN3O95197 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
RTN3O95197 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
RTN3O95197 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
RTN3O95197 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
RTN3O95197 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC15.52■□□□□ 0.08
RTN3O95197 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
RTN3O95197 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
RTN3O95197 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
RTN3O95197 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
RTN3O95197 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC15.52■□□□□ 0.08
RTN3O95197 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC15.52■□□□□ 0.08
RTN3O95197 NME6-203ENST00000415644 849 ntTSL 2 BASIC15.52■□□□□ 0.08
RTN3O95197 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
RTN3O95197 AC044849.1-201ENST00000519737 1188 ntBASIC15.52■□□□□ 0.08
RTN3O95197 RN7SL163P-201ENST00000583100 276 ntBASIC15.52■□□□□ 0.08
RTN3O95197 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
RTN3O95197 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
RTN3O95197 AC009884.2-201ENST00000603110 324 ntBASIC15.52■□□□□ 0.08
RTN3O95197 AL451050.2-201ENST00000606967 682 ntBASIC15.52■□□□□ 0.08
RTN3O95197 AC138649.2-201ENST00000615886 705 ntBASIC15.52■□□□□ 0.08
RTN3O95197 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC15.52■□□□□ 0.08
RTN3O95197 AL136295.7-201ENST00000619226 1200 ntBASIC15.52■□□□□ 0.08
RTN3O95197 MVK-217ENST00000639206 367 ntTSL 5 BASIC15.52■□□□□ 0.08
RTN3O95197 AC004923.1-202ENST00000642106 209 ntBASIC15.52■□□□□ 0.08
RTN3O95197 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
RTN3O95197 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.07
RTN3O95197 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
RTN3O95197 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC15.52■□□□□ 0.07
RTN3O95197 AMT-239ENST00000636865 1914 ntTSL 5 BASIC15.52■□□□□ 0.07
RTN3O95197 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
RTN3O95197 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
RTN3O95197 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
RTN3O95197 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
RTN3O95197 ADCY7-208ENST00000566433 2535 ntTSL 5 BASIC15.52■□□□□ 0.07
RTN3O95197 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC15.52■□□□□ 0.07
RTN3O95197 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC15.52■□□□□ 0.07
RTN3O95197 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
RTN3O95197 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
RTN3O95197 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
RTN3O95197 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RTN3O95197 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
RTN3O95197 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC15.51■□□□□ 0.07
RTN3O95197 AC244394.1-201ENST00000435000 1665 ntBASIC15.51■□□□□ 0.07
RTN3O95197 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RTN3O95197 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
RTN3O95197 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC15.51■□□□□ 0.07
RTN3O95197 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RTN3O95197 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
RTN3O95197 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
RTN3O95197 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
RTN3O95197 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
RTN3O95197 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
RTN3O95197 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC15.51■□□□□ 0.07
RTN3O95197 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
RTN3O95197 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
RTN3O95197 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
RTN3O95197 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RTN3O95197 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RTN3O95197 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
RTN3O95197 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
RTN3O95197 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
RTN3O95197 DPM3-202ENST00000368399 517 ntBASIC15.51■□□□□ 0.07
RTN3O95197 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
RTN3O95197 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
RTN3O95197 CALR4P-201ENST00000431943 946 ntBASIC15.51■□□□□ 0.07
RTN3O95197 NKAIN1P1-201ENST00000435754 582 ntBASIC15.51■□□□□ 0.07
RTN3O95197 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC15.51■□□□□ 0.07
RTN3O95197 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC15.51■□□□□ 0.07
RTN3O95197 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC15.51■□□□□ 0.07
RTN3O95197 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC15.51■□□□□ 0.07
RTN3O95197 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RTN3O95197 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RTN3O95197 MIR600HG-201ENST00000449175 5984 ntBASIC15.51■□□□□ 0.07
RTN3O95197 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
RTN3O95197 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
RTN3O95197 C1QTNF1-204ENST00000392445 2833 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
RTN3O95197 F10-203ENST00000409306 1450 ntTSL 3 BASIC15.51■□□□□ 0.07
RTN3O95197 AC004899.1-201ENST00000424687 1714 ntBASIC15.51■□□□□ 0.07
RTN3O95197 AL139385.1-201ENST00000611744 3272 ntBASIC15.51■□□□□ 0.07
RTN3O95197 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC15.51■□□□□ 0.07
RTN3O95197 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC15.51■□□□□ 0.07
RTN3O95197 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
RTN3O95197 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 66.1 ms