Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
NPHP1O15259 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
NPHP1O15259 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
NPHP1O15259 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC18.52■□□□□ 0.56
NPHP1O15259 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC18.52■□□□□ 0.56
NPHP1O15259 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
NPHP1O15259 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC18.52■□□□□ 0.56
NPHP1O15259 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC18.52■□□□□ 0.56
NPHP1O15259 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
NPHP1O15259 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC18.52■□□□□ 0.56
NPHP1O15259 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC18.52■□□□□ 0.56
NPHP1O15259 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
NPHP1O15259 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
NPHP1O15259 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
NPHP1O15259 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
NPHP1O15259 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC18.52■□□□□ 0.56
NPHP1O15259 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
NPHP1O15259 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
NPHP1O15259 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC18.52■□□□□ 0.55
NPHP1O15259 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
NPHP1O15259 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC18.52■□□□□ 0.55
NPHP1O15259 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC18.52■□□□□ 0.55
NPHP1O15259 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
NPHP1O15259 TP73-201ENST00000346387 4854 ntTSL 5 BASIC18.52■□□□□ 0.55
NPHP1O15259 AC087481.3-201ENST00000602886 1894 ntBASIC18.52■□□□□ 0.55
NPHP1O15259 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.55
NPHP1O15259 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
NPHP1O15259 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
NPHP1O15259 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
NPHP1O15259 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
NPHP1O15259 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
NPHP1O15259 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
NPHP1O15259 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
NPHP1O15259 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
NPHP1O15259 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
NPHP1O15259 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC18.51■□□□□ 0.55
NPHP1O15259 ZBED1P1-201ENST00000502364 1930 ntBASIC18.51■□□□□ 0.55
NPHP1O15259 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
NPHP1O15259 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
NPHP1O15259 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
NPHP1O15259 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
NPHP1O15259 AL157407.1-201ENST00000435784 904 ntBASIC18.51■□□□□ 0.55
NPHP1O15259 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC18.51■□□□□ 0.55
NPHP1O15259 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
NPHP1O15259 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
NPHP1O15259 AP000358.1-201ENST00000456260 156 ntBASIC18.51■□□□□ 0.55
NPHP1O15259 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
NPHP1O15259 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC18.51■□□□□ 0.55
NPHP1O15259 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC18.51■□□□□ 0.55
NPHP1O15259 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
NPHP1O15259 AC007881.3-201ENST00000608897 607 ntBASIC18.51■□□□□ 0.55
NPHP1O15259 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC18.51■□□□□ 0.55
NPHP1O15259 WT1-AS_6.1-201ENST00000614919 121 ntBASIC18.51■□□□□ 0.55
NPHP1O15259 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
NPHP1O15259 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC18.51■□□□□ 0.55
NPHP1O15259 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
NPHP1O15259 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC18.51■□□□□ 0.55
NPHP1O15259 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
NPHP1O15259 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
NPHP1O15259 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
NPHP1O15259 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
NPHP1O15259 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC18.51■□□□□ 0.55
NPHP1O15259 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
NPHP1O15259 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
NPHP1O15259 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
NPHP1O15259 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
NPHP1O15259 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
NPHP1O15259 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC18.5■□□□□ 0.55
NPHP1O15259 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
NPHP1O15259 KRT18P9-201ENST00000604826 1300 ntBASIC18.5■□□□□ 0.55
NPHP1O15259 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC18.5■□□□□ 0.55
NPHP1O15259 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC18.5■□□□□ 0.55
NPHP1O15259 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC18.5■□□□□ 0.55
NPHP1O15259 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
NPHP1O15259 CYP51A1P3-201ENST00000400072 1428 ntBASIC18.5■□□□□ 0.55
NPHP1O15259 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC18.5■□□□□ 0.55
NPHP1O15259 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC18.5■□□□□ 0.55
NPHP1O15259 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
NPHP1O15259 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
NPHP1O15259 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
NPHP1O15259 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
NPHP1O15259 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
NPHP1O15259 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC18.5■□□□□ 0.55
NPHP1O15259 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC18.5■□□□□ 0.55
NPHP1O15259 ACYP1-201ENST00000238618 627 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
NPHP1O15259 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
NPHP1O15259 MBP-201ENST00000354542 575 ntTSL 2 BASIC18.5■□□□□ 0.55
NPHP1O15259 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC18.5■□□□□ 0.55
NPHP1O15259 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC18.5■□□□□ 0.55
NPHP1O15259 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC18.5■□□□□ 0.55
NPHP1O15259 MIR3677-201ENST00000578964 60 ntBASIC18.5■□□□□ 0.55
NPHP1O15259 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC18.5■□□□□ 0.55
NPHP1O15259 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC18.5■□□□□ 0.55
NPHP1O15259 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC18.5■□□□□ 0.55
NPHP1O15259 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
NPHP1O15259 NRXN1-222ENST00000625672 8113 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
NPHP1O15259 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
NPHP1O15259 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
NPHP1O15259 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
NPHP1O15259 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms