Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
RPAP1Q9BWH6 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
RPAP1Q9BWH6 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
RPAP1Q9BWH6 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC17.76■□□□□ 0.43
RPAP1Q9BWH6 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
RPAP1Q9BWH6 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC17.76■□□□□ 0.43
RPAP1Q9BWH6 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
RPAP1Q9BWH6 PUDPP3-201ENST00000445368 636 ntBASIC17.76■□□□□ 0.43
RPAP1Q9BWH6 FTLP1-201ENST00000449155 526 ntBASIC17.76■□□□□ 0.43
RPAP1Q9BWH6 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
RPAP1Q9BWH6 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC17.76■□□□□ 0.43
RPAP1Q9BWH6 PRKXP1-201ENST00000561423 1122 ntBASIC17.76■□□□□ 0.43
RPAP1Q9BWH6 AC103988.2-201ENST00000561804 725 ntBASIC17.76■□□□□ 0.43
RPAP1Q9BWH6 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC17.76■□□□□ 0.43
RPAP1Q9BWH6 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC17.76■□□□□ 0.43
RPAP1Q9BWH6 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
RPAP1Q9BWH6 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RPAP1Q9BWH6 E2F3P2-201ENST00000447755 1422 ntBASIC17.75■□□□□ 0.43
RPAP1Q9BWH6 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC17.75■□□□□ 0.43
RPAP1Q9BWH6 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC17.75■□□□□ 0.43
RPAP1Q9BWH6 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC17.75■□□□□ 0.43
RPAP1Q9BWH6 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RPAP1Q9BWH6 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
RPAP1Q9BWH6 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RPAP1Q9BWH6 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
RPAP1Q9BWH6 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC17.75■□□□□ 0.43
RPAP1Q9BWH6 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC17.75■□□□□ 0.43
RPAP1Q9BWH6 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
RPAP1Q9BWH6 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC17.75■□□□□ 0.43
RPAP1Q9BWH6 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC17.75■□□□□ 0.43
RPAP1Q9BWH6 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC17.75■□□□□ 0.43
RPAP1Q9BWH6 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RPAP1Q9BWH6 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RPAP1Q9BWH6 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
RPAP1Q9BWH6 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
RPAP1Q9BWH6 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RPAP1Q9BWH6 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
RPAP1Q9BWH6 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC17.75■□□□□ 0.43
RPAP1Q9BWH6 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
RPAP1Q9BWH6 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC17.75■□□□□ 0.43
RPAP1Q9BWH6 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RPAP1Q9BWH6 PDIA3P2-201ENST00000428073 158 ntBASIC17.75■□□□□ 0.43
RPAP1Q9BWH6 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC17.75■□□□□ 0.43
RPAP1Q9BWH6 VDAC1P1-201ENST00000439229 848 ntBASIC17.75■□□□□ 0.43
RPAP1Q9BWH6 AC006335.1-201ENST00000445200 547 ntBASIC17.75■□□□□ 0.43
RPAP1Q9BWH6 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC17.75■□□□□ 0.43
RPAP1Q9BWH6 HLA-J-204ENST00000495278 958 ntBASIC17.75■□□□□ 0.43
RPAP1Q9BWH6 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC17.75■□□□□ 0.43
RPAP1Q9BWH6 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
RPAP1Q9BWH6 AC009779.1-201ENST00000551138 283 ntBASIC17.75■□□□□ 0.43
RPAP1Q9BWH6 AL353770.1-201ENST00000614915 403 ntBASIC17.75■□□□□ 0.43
RPAP1Q9BWH6 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC17.75■□□□□ 0.43
RPAP1Q9BWH6 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
RPAP1Q9BWH6 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RPAP1Q9BWH6 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RPAP1Q9BWH6 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC17.75■□□□□ 0.43
RPAP1Q9BWH6 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
RPAP1Q9BWH6 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RPAP1Q9BWH6 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC17.75■□□□□ 0.43
RPAP1Q9BWH6 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC17.74■□□□□ 0.43
RPAP1Q9BWH6 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC17.74■□□□□ 0.43
RPAP1Q9BWH6 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RPAP1Q9BWH6 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
RPAP1Q9BWH6 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
RPAP1Q9BWH6 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
RPAP1Q9BWH6 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
RPAP1Q9BWH6 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RPAP1Q9BWH6 POLL-206ENST00000370172 2308 ntTSL 2 BASIC17.74■□□□□ 0.43
RPAP1Q9BWH6 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RPAP1Q9BWH6 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
RPAP1Q9BWH6 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
RPAP1Q9BWH6 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
RPAP1Q9BWH6 ISCA2P1-201ENST00000425548 448 ntBASIC17.74■□□□□ 0.43
RPAP1Q9BWH6 MPRIPP1-201ENST00000452433 1089 ntBASIC17.74■□□□□ 0.43
RPAP1Q9BWH6 AC104073.2-201ENST00000453737 312 ntBASIC17.74■□□□□ 0.43
RPAP1Q9BWH6 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC17.74■□□□□ 0.43
RPAP1Q9BWH6 SPCS2P2-201ENST00000603270 608 ntBASIC17.74■□□□□ 0.43
RPAP1Q9BWH6 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RPAP1Q9BWH6 MRPL37P1-201ENST00000592451 1337 ntBASIC17.74■□□□□ 0.43
RPAP1Q9BWH6 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
RPAP1Q9BWH6 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
RPAP1Q9BWH6 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
RPAP1Q9BWH6 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
RPAP1Q9BWH6 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RPAP1Q9BWH6 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC17.74■□□□□ 0.43
RPAP1Q9BWH6 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC17.74■□□□□ 0.43
RPAP1Q9BWH6 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC17.74■□□□□ 0.43
RPAP1Q9BWH6 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RPAP1Q9BWH6 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
RPAP1Q9BWH6 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
RPAP1Q9BWH6 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RPAP1Q9BWH6 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RPAP1Q9BWH6 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
RPAP1Q9BWH6 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC17.74■□□□□ 0.43
RPAP1Q9BWH6 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC17.74■□□□□ 0.43
RPAP1Q9BWH6 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RPAP1Q9BWH6 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RPAP1Q9BWH6 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
RPAP1Q9BWH6 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
RPAP1Q9BWH6 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms