Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 DBNDD2-207ENST00000372722 1202 ntTSL 3 BASIC17.23■□□□□ 0.35
SMC1BQ8NDV3 SKOR2-201ENST00000400404 891 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
SMC1BQ8NDV3 EIF4E2-205ENST00000409394 604 ntTSL 3 BASIC17.23■□□□□ 0.35
SMC1BQ8NDV3 HTATIP2-202ENST00000421577 886 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
SMC1BQ8NDV3 TXNL4B-203ENST00000426362 965 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
SMC1BQ8NDV3 LRRC3-AS1-201ENST00000426578 784 ntTSL 3 BASIC17.23■□□□□ 0.35
SMC1BQ8NDV3 CDCA4P4-201ENST00000435216 680 ntBASIC17.23■□□□□ 0.35
SMC1BQ8NDV3 AL356000.1-201ENST00000441073 1238 ntBASIC17.23■□□□□ 0.35
SMC1BQ8NDV3 RAMP3-203ENST00000496212 543 ntAPPRIS ALT2 TSL 4 BASIC17.23■□□□□ 0.35
SMC1BQ8NDV3 GCOM2-201ENST00000509133 1104 ntBASIC17.23■□□□□ 0.35
SMC1BQ8NDV3 AC113347.2-201ENST00000512350 279 ntBASIC17.23■□□□□ 0.35
SMC1BQ8NDV3 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SMC1BQ8NDV3 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC17.23■□□□□ 0.35
SMC1BQ8NDV3 LAMTOR1-208ENST00000545249 965 ntTSL 3 BASIC17.23■□□□□ 0.35
SMC1BQ8NDV3 AC004801.1-201ENST00000549557 360 ntBASIC17.23■□□□□ 0.35
SMC1BQ8NDV3 COX5A-205ENST00000568517 582 ntTSL 3 BASIC17.23■□□□□ 0.35
SMC1BQ8NDV3 MT1G-203ENST00000568675 628 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SMC1BQ8NDV3 AL451165.2-201ENST00000606971 718 ntTSL 2 BASIC17.23■□□□□ 0.35
SMC1BQ8NDV3 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC17.23■□□□□ 0.35
SMC1BQ8NDV3 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC17.23■□□□□ 0.35
SMC1BQ8NDV3 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
SMC1BQ8NDV3 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
SMC1BQ8NDV3 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
SMC1BQ8NDV3 AC007292.2-201ENST00000593524 1812 ntBASIC17.23■□□□□ 0.35
SMC1BQ8NDV3 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SMC1BQ8NDV3 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
SMC1BQ8NDV3 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC17.23■□□□□ 0.35
SMC1BQ8NDV3 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SMC1BQ8NDV3 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
SMC1BQ8NDV3 AGK-211ENST00000629555 2765 ntTSL 5 BASIC17.23■□□□□ 0.35
SMC1BQ8NDV3 KLK4-201ENST00000324041 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SMC1BQ8NDV3 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SMC1BQ8NDV3 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SMC1BQ8NDV3 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SMC1BQ8NDV3 UBE2L5P-202ENST00000635918 1513 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
SMC1BQ8NDV3 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SMC1BQ8NDV3 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SMC1BQ8NDV3 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SMC1BQ8NDV3 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC17.22■□□□□ 0.35
SMC1BQ8NDV3 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC17.22■□□□□ 0.35
SMC1BQ8NDV3 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC17.22■□□□□ 0.35
SMC1BQ8NDV3 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SMC1BQ8NDV3 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SMC1BQ8NDV3 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
SMC1BQ8NDV3 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SMC1BQ8NDV3 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
SMC1BQ8NDV3 IFNLR1-204ENST00000374419 953 ntTSL 5 BASIC17.22■□□□□ 0.35
SMC1BQ8NDV3 GGTLC4P-201ENST00000402176 664 ntBASIC17.22■□□□□ 0.35
SMC1BQ8NDV3 COPS7B-204ENST00000409091 806 ntTSL 5 BASIC17.22■□□□□ 0.35
SMC1BQ8NDV3 MED15P3-201ENST00000413613 326 ntBASIC17.22■□□□□ 0.35
SMC1BQ8NDV3 IQCF4-202ENST00000422896 745 ntTSL 2 BASIC17.22■□□□□ 0.35
SMC1BQ8NDV3 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SMC1BQ8NDV3 NRADDP-201ENST00000437305 691 ntBASIC17.22■□□□□ 0.35
SMC1BQ8NDV3 AC108724.1-201ENST00000481669 352 ntBASIC17.22■□□□□ 0.35
SMC1BQ8NDV3 RN7SL564P-201ENST00000496309 250 ntBASIC17.22■□□□□ 0.35
SMC1BQ8NDV3 MIR2278-201ENST00000516344 96 ntBASIC17.22■□□□□ 0.35
SMC1BQ8NDV3 EHF-208ENST00000530286 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SMC1BQ8NDV3 KLKP1-202ENST00000597246 1125 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SMC1BQ8NDV3 LINC01588-216ENST00000623502 975 ntTSL 2 BASIC17.22■□□□□ 0.35
SMC1BQ8NDV3 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
SMC1BQ8NDV3 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SMC1BQ8NDV3 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SMC1BQ8NDV3 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC17.22■□□□□ 0.35
SMC1BQ8NDV3 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
SMC1BQ8NDV3 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SMC1BQ8NDV3 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
SMC1BQ8NDV3 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
SMC1BQ8NDV3 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SMC1BQ8NDV3 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SMC1BQ8NDV3 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC17.21■□□□□ 0.35
SMC1BQ8NDV3 ZDHHC6-201ENST00000369404 1721 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SMC1BQ8NDV3 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
SMC1BQ8NDV3 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SMC1BQ8NDV3 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SMC1BQ8NDV3 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SMC1BQ8NDV3 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC17.21■□□□□ 0.35
SMC1BQ8NDV3 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SMC1BQ8NDV3 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC17.21■□□□□ 0.35
SMC1BQ8NDV3 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SMC1BQ8NDV3 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
SMC1BQ8NDV3 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SMC1BQ8NDV3 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
SMC1BQ8NDV3 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
SMC1BQ8NDV3 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SMC1BQ8NDV3 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC17.21■□□□□ 0.35
SMC1BQ8NDV3 AL157823.1-201ENST00000403727 628 ntBASIC17.21■□□□□ 0.35
SMC1BQ8NDV3 AC103923.1-201ENST00000453229 1228 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SMC1BQ8NDV3 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC17.21■□□□□ 0.35
SMC1BQ8NDV3 TMEM222-203ENST00000464813 1071 ntTSL 2 BASIC17.21■□□□□ 0.35
SMC1BQ8NDV3 RN7SL147P-201ENST00000487345 298 ntBASIC17.21■□□□□ 0.35
SMC1BQ8NDV3 NUDCD2-202ENST00000517501 448 ntTSL 5 BASIC17.21■□□□□ 0.35
SMC1BQ8NDV3 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC17.21■□□□□ 0.35
SMC1BQ8NDV3 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC17.21■□□□□ 0.35
SMC1BQ8NDV3 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC17.21■□□□□ 0.35
SMC1BQ8NDV3 AL357143.1-203ENST00000639750 881 ntBASIC17.21■□□□□ 0.35
SMC1BQ8NDV3 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
SMC1BQ8NDV3 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SMC1BQ8NDV3 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SMC1BQ8NDV3 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SMC1BQ8NDV3 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms