Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 EHF-208ENST00000530286 1280 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
CSMD3Q7Z407 AP003040.1-201ENST00000532044 1024 ntBASIC9.94□□□□□ -0.82
CSMD3Q7Z407 BID-209ENST00000551952 700 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
CSMD3Q7Z407 NKAPP1-204ENST00000555168 557 ntTSL 4 BASIC9.94□□□□□ -0.82
CSMD3Q7Z407 TUBB6-214ENST00000592683 481 ntTSL 4 BASIC9.94□□□□□ -0.82
CSMD3Q7Z407 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
CSMD3Q7Z407 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC9.94□□□□□ -0.82
CSMD3Q7Z407 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC9.94□□□□□ -0.82
CSMD3Q7Z407 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC9.94□□□□□ -0.82
CSMD3Q7Z407 F10-201ENST00000375551 1509 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
CSMD3Q7Z407 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC9.94□□□□□ -0.82
CSMD3Q7Z407 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC9.94□□□□□ -0.82
CSMD3Q7Z407 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
CSMD3Q7Z407 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 C1orf87-202ENST00000450089 1307 ntTSL 5 BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 CD300LG-203ENST00000377203 1060 ntAPPRIS ALT2 TSL 2 BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 LINP1-201ENST00000417112 917 ntTSL 2 BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 GNAT1-202ENST00000433068 1224 ntAPPRIS P1 TSL 5 BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 AAMDC-207ENST00000527134 693 ntTSL 3 BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 AC073896.4-201ENST00000553176 403 ntTSL 2 BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 AC092756.1-201ENST00000560248 448 ntTSL 3 BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 YWHAE-212ENST00000575977 540 ntTSL 2 BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 LINC01444-201ENST00000580867 764 ntTSL 2 BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 RNF103-CHMP3-202ENST00000604011 1135 ntAPPRIS P1 TSL 2 BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 ANKRD36C-208ENST00000619511 737 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 CRYM-202ENST00000543948 1400 ntAPPRIS P1 TSL 5 BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 FAU-201ENST00000279259 461 ntTSL 2 BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 PILRA-205ENST00000453419 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 AC004889.1-201ENST00000498693 856 ntTSL 5 BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 AC145422.1-201ENST00000541574 544 ntTSL 3 BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 SIGLEC6-204ENST00000391797 1391 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 PDXDC2P-206ENST00000534700 1315 ntBASIC9.93□□□□□ -0.82
CSMD3Q7Z407 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 PPM1N-203ENST00000396737 872 ntTSL 2 BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 PYM1-203ENST00000408946 1226 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 AHCYP3-201ENST00000420053 1279 ntBASIC9.93□□□□□ -0.82
CSMD3Q7Z407 KRT18P4-201ENST00000422599 1288 ntBASIC9.93□□□□□ -0.82
CSMD3Q7Z407 FOXP4-AS1-202ENST00000432751 409 ntTSL 2 BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 AC019205.2-201ENST00000442007 1083 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 IKBKB-223ENST00000522147 954 ntTSL 5 BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 HIST2H4A-201ENST00000578186 583 ntAPPRIS P1 BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 AL136982.5-201ENST00000605222 294 ntBASIC9.93□□□□□ -0.82
CSMD3Q7Z407 AL137793.2-201ENST00000632635 659 ntTSL 3 BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
CSMD3Q7Z407 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
CSMD3Q7Z407 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC9.92□□□□□ -0.82
CSMD3Q7Z407 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC9.92□□□□□ -0.82
CSMD3Q7Z407 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC9.92□□□□□ -0.82
CSMD3Q7Z407 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
CSMD3Q7Z407 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC9.92□□□□□ -0.82
CSMD3Q7Z407 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC9.92□□□□□ -0.82
CSMD3Q7Z407 CDK4P1-201ENST00000454213 828 ntBASIC9.92□□□□□ -0.82
CSMD3Q7Z407 C21orf62-204ENST00000490358 1155 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
CSMD3Q7Z407 NR4A1-209ENST00000548232 1101 ntTSL 1 (best) BASIC9.92□□□□□ -0.82
CSMD3Q7Z407 AC007298.2-201ENST00000551849 862 ntTSL 3 BASIC9.92□□□□□ -0.82
CSMD3Q7Z407 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
CSMD3Q7Z407 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC9.92□□□□□ -0.82
CSMD3Q7Z407 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
CSMD3Q7Z407 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC9.92□□□□□ -0.82
CSMD3Q7Z407 POLL-206ENST00000370172 2308 ntTSL 2 BASIC9.92□□□□□ -0.82
CSMD3Q7Z407 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
CSMD3Q7Z407 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC9.92□□□□□ -0.82
CSMD3Q7Z407 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC9.92□□□□□ -0.82
CSMD3Q7Z407 PRL-201ENST00000306482 1354 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
CSMD3Q7Z407 LINC00205-201ENST00000433465 1391 ntTSL 3 BASIC9.92□□□□□ -0.82
CSMD3Q7Z407 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC9.92□□□□□ -0.82
CSMD3Q7Z407 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC9.92□□□□□ -0.82
CSMD3Q7Z407 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms