Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
PCDH1Q08174 MPV17-205ENST00000402310 906 ntTSL 5 BASIC14.21□□□□□ -0.13
PCDH1Q08174 RGS5-214ENST00000429865 754 ntTSL 3 BASIC14.21□□□□□ -0.13
PCDH1Q08174 KRT43P-201ENST00000434019 910 ntBASIC14.21□□□□□ -0.13
PCDH1Q08174 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
PCDH1Q08174 AL590640.2-201ENST00000457038 527 ntBASIC14.21□□□□□ -0.13
PCDH1Q08174 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
PCDH1Q08174 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
PCDH1Q08174 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
PCDH1Q08174 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC14.21□□□□□ -0.13
PCDH1Q08174 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC14.21□□□□□ -0.13
PCDH1Q08174 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC14.21□□□□□ -0.13
PCDH1Q08174 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
PCDH1Q08174 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC14.21□□□□□ -0.13
PCDH1Q08174 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
PCDH1Q08174 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
PCDH1Q08174 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC14.21□□□□□ -0.13
PCDH1Q08174 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
PCDH1Q08174 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
PCDH1Q08174 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
PCDH1Q08174 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC14.21□□□□□ -0.13
PCDH1Q08174 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
PCDH1Q08174 AC006504.5-208ENST00000588784 2401 ntBASIC14.21□□□□□ -0.14
PCDH1Q08174 KRT8P28-201ENST00000433288 1390 ntBASIC14.21□□□□□ -0.14
PCDH1Q08174 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
PCDH1Q08174 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
PCDH1Q08174 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
PCDH1Q08174 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
PCDH1Q08174 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC14.2□□□□□ -0.14
PCDH1Q08174 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
PCDH1Q08174 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC14.2□□□□□ -0.14
PCDH1Q08174 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC14.2□□□□□ -0.14
PCDH1Q08174 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
PCDH1Q08174 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
PCDH1Q08174 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
PCDH1Q08174 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC14.2□□□□□ -0.14
PCDH1Q08174 AC016397.2-201ENST00000624848 1985 ntBASIC14.2□□□□□ -0.14
PCDH1Q08174 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC14.2□□□□□ -0.14
PCDH1Q08174 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
PCDH1Q08174 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
PCDH1Q08174 AL137784.3-201ENST00000623858 2288 ntBASIC14.2□□□□□ -0.14
PCDH1Q08174 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
PCDH1Q08174 BEND3P1-201ENST00000421591 1944 ntBASIC14.2□□□□□ -0.14
PCDH1Q08174 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
PCDH1Q08174 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
PCDH1Q08174 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC14.2□□□□□ -0.14
PCDH1Q08174 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
PCDH1Q08174 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
PCDH1Q08174 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
PCDH1Q08174 AC005034.1-201ENST00000426657 489 ntBASIC14.2□□□□□ -0.14
PCDH1Q08174 GAPDHP21-201ENST00000450301 1010 ntBASIC14.2□□□□□ -0.14
PCDH1Q08174 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
PCDH1Q08174 COX5BP1-201ENST00000507622 393 ntBASIC14.2□□□□□ -0.14
PCDH1Q08174 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC14.2□□□□□ -0.14
PCDH1Q08174 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC14.2□□□□□ -0.14
PCDH1Q08174 RBM7-207ENST00000544582 692 ntTSL 3 BASIC14.2□□□□□ -0.14
PCDH1Q08174 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC14.2□□□□□ -0.14
PCDH1Q08174 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
PCDH1Q08174 AL358472.3-201ENST00000608147 415 ntBASIC14.2□□□□□ -0.14
PCDH1Q08174 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC14.2□□□□□ -0.14
PCDH1Q08174 RHOXF1P1-202ENST00000635473 501 ntBASIC14.2□□□□□ -0.14
PCDH1Q08174 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
PCDH1Q08174 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
PCDH1Q08174 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
PCDH1Q08174 HPD-204ENST00000543163 1709 ntTSL 5 BASIC14.2□□□□□ -0.14
PCDH1Q08174 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
PCDH1Q08174 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
PCDH1Q08174 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
PCDH1Q08174 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC14.2□□□□□ -0.14
PCDH1Q08174 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
PCDH1Q08174 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
PCDH1Q08174 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC14.2□□□□□ -0.14
PCDH1Q08174 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC14.2□□□□□ -0.14
PCDH1Q08174 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
PCDH1Q08174 INTS4P1-203ENST00000641008 3683 ntBASIC14.2□□□□□ -0.14
PCDH1Q08174 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC14.2□□□□□ -0.14
PCDH1Q08174 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
PCDH1Q08174 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC14.2□□□□□ -0.14
PCDH1Q08174 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC14.2□□□□□ -0.14
PCDH1Q08174 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
PCDH1Q08174 GSN-209ENST00000449733 2702 ntTSL 2 BASIC14.2□□□□□ -0.14
PCDH1Q08174 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
PCDH1Q08174 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
PCDH1Q08174 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC14.2□□□□□ -0.14
PCDH1Q08174 NIN-202ENST00000324330 4364 ntTSL 5 BASIC14.2□□□□□ -0.14
PCDH1Q08174 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
PCDH1Q08174 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
PCDH1Q08174 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
PCDH1Q08174 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC14.19□□□□□ -0.14
PCDH1Q08174 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
PCDH1Q08174 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC14.19□□□□□ -0.14
PCDH1Q08174 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC14.19□□□□□ -0.14
PCDH1Q08174 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC14.19□□□□□ -0.14
PCDH1Q08174 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
PCDH1Q08174 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC14.19□□□□□ -0.14
PCDH1Q08174 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC14.19□□□□□ -0.14
PCDH1Q08174 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
PCDH1Q08174 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
PCDH1Q08174 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC14.19□□□□□ -0.14
PCDH1Q08174 MPV17-206ENST00000402722 827 ntTSL 3 BASIC14.19□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms