Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
TFF3Q07654 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
TFF3Q07654 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
TFF3Q07654 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
TFF3Q07654 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
TFF3Q07654 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC12.92□□□□□ -0.34
TFF3Q07654 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC12.92□□□□□ -0.34
TFF3Q07654 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
TFF3Q07654 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
TFF3Q07654 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
TFF3Q07654 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC12.92□□□□□ -0.34
TFF3Q07654 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC12.92□□□□□ -0.34
TFF3Q07654 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
TFF3Q07654 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
TFF3Q07654 AC114501.1-201ENST00000445949 172 ntBASIC12.92□□□□□ -0.34
TFF3Q07654 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC12.92□□□□□ -0.34
TFF3Q07654 AC008723.1-201ENST00000506922 207 ntBASIC12.92□□□□□ -0.34
TFF3Q07654 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC12.92□□□□□ -0.34
TFF3Q07654 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC12.92□□□□□ -0.34
TFF3Q07654 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC12.92□□□□□ -0.34
TFF3Q07654 FOS-204ENST00000554617 796 ntTSL 2 BASIC12.92□□□□□ -0.34
TFF3Q07654 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC12.92□□□□□ -0.34
TFF3Q07654 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC12.92□□□□□ -0.34
TFF3Q07654 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC12.92□□□□□ -0.34
TFF3Q07654 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC12.92□□□□□ -0.34
TFF3Q07654 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC12.92□□□□□ -0.34
TFF3Q07654 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
TFF3Q07654 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC12.92□□□□□ -0.34
TFF3Q07654 AC242376.2-201ENST00000619355 883 ntBASIC12.92□□□□□ -0.34
TFF3Q07654 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
TFF3Q07654 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
TFF3Q07654 AC027601.3-201ENST00000622907 509 ntBASIC12.92□□□□□ -0.34
TFF3Q07654 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
TFF3Q07654 HLA-C-210ENST00000640219 976 ntBASIC12.92□□□□□ -0.34
TFF3Q07654 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
TFF3Q07654 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
TFF3Q07654 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
TFF3Q07654 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
TFF3Q07654 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
TFF3Q07654 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
TFF3Q07654 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
TFF3Q07654 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
TFF3Q07654 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC12.92□□□□□ -0.34
TFF3Q07654 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
TFF3Q07654 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
TFF3Q07654 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
TFF3Q07654 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
TFF3Q07654 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
TFF3Q07654 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
TFF3Q07654 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
TFF3Q07654 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
TFF3Q07654 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
TFF3Q07654 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC12.91□□□□□ -0.34
TFF3Q07654 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
TFF3Q07654 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
TFF3Q07654 CYP4F23P-201ENST00000593402 1579 ntBASIC12.91□□□□□ -0.34
TFF3Q07654 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
TFF3Q07654 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC12.91□□□□□ -0.34
TFF3Q07654 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
TFF3Q07654 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC12.91□□□□□ -0.34
TFF3Q07654 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
TFF3Q07654 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC12.91□□□□□ -0.34
TFF3Q07654 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC12.91□□□□□ -0.34
TFF3Q07654 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC12.91□□□□□ -0.34
TFF3Q07654 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC12.91□□□□□ -0.34
TFF3Q07654 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC12.91□□□□□ -0.34
TFF3Q07654 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
TFF3Q07654 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
TFF3Q07654 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
TFF3Q07654 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC12.91□□□□□ -0.34
TFF3Q07654 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
TFF3Q07654 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
TFF3Q07654 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
TFF3Q07654 NCR3-202ENST00000376071 541 ntTSL 5 BASIC12.91□□□□□ -0.34
TFF3Q07654 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC12.91□□□□□ -0.34
TFF3Q07654 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC12.91□□□□□ -0.34
TFF3Q07654 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
TFF3Q07654 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC12.91□□□□□ -0.34
TFF3Q07654 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
TFF3Q07654 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC12.91□□□□□ -0.34
TFF3Q07654 RPL8P2-201ENST00000430538 502 ntBASIC12.91□□□□□ -0.34
TFF3Q07654 AC026320.2-201ENST00000434379 478 ntBASIC12.91□□□□□ -0.34
TFF3Q07654 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC12.91□□□□□ -0.34
TFF3Q07654 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC12.91□□□□□ -0.34
TFF3Q07654 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC12.91□□□□□ -0.34
TFF3Q07654 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC12.91□□□□□ -0.34
TFF3Q07654 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
TFF3Q07654 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC12.91□□□□□ -0.34
TFF3Q07654 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC12.91□□□□□ -0.34
TFF3Q07654 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC12.91□□□□□ -0.34
TFF3Q07654 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC12.91□□□□□ -0.34
TFF3Q07654 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC12.91□□□□□ -0.34
TFF3Q07654 HPN-206ENST00000597419 1212 ntTSL 5 BASIC12.91□□□□□ -0.34
TFF3Q07654 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC12.91□□□□□ -0.34
TFF3Q07654 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
TFF3Q07654 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC12.91□□□□□ -0.34
TFF3Q07654 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
TFF3Q07654 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
TFF3Q07654 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
TFF3Q07654 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 431.3 ms