Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC8.71□□□□□ -1.01
HSPG2P98160 NR1H4-203ENST00000392986 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC8.71□□□□□ -1.01
HSPG2P98160 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.01
HSPG2P98160 AC015909.5-201ENST00000624336 2266 ntBASIC8.71□□□□□ -1.01
HSPG2P98160 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC8.71□□□□□ -1.01
HSPG2P98160 LINC02347-203ENST00000540774 1442 ntTSL 5 BASIC8.71□□□□□ -1.01
HSPG2P98160 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.01
HSPG2P98160 MCRS1-203ENST00000546244 1686 ntTSL 1 (best) BASIC8.71□□□□□ -1.01
HSPG2P98160 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC8.71□□□□□ -1.01
HSPG2P98160 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC8.71□□□□□ -1.01
HSPG2P98160 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.01
HSPG2P98160 MT1H-201ENST00000332374 397 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.01
HSPG2P98160 POLR3DP1-201ENST00000398689 1176 ntBASIC8.71□□□□□ -1.01
HSPG2P98160 AC093495.1-201ENST00000420253 1067 ntTSL 4 BASIC8.71□□□□□ -1.01
HSPG2P98160 AC104117.4-201ENST00000521486 847 ntBASIC8.71□□□□□ -1.01
HSPG2P98160 BX510359.7-201ENST00000619819 630 ntBASIC8.71□□□□□ -1.01
HSPG2P98160 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.01
HSPG2P98160 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC8.71□□□□□ -1.02
HSPG2P98160 IMMT-212ENST00000620815 1520 ntTSL 1 (best) BASIC8.71□□□□□ -1.02
HSPG2P98160 XRN1-203ENST00000463916 2075 ntTSL 1 (best) BASIC8.71□□□□□ -1.02
HSPG2P98160 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC8.71□□□□□ -1.02
HSPG2P98160 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC8.71□□□□□ -1.02
HSPG2P98160 NAP1L1-226ENST00000552342 1526 ntTSL 5 BASIC8.71□□□□□ -1.02
HSPG2P98160 MBIP-211ENST00000621657 1809 ntTSL 5 BASIC8.71□□□□□ -1.02
HSPG2P98160 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC8.71□□□□□ -1.02
HSPG2P98160 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.02
HSPG2P98160 AL591499.1-201ENST00000307155 1153 ntBASIC8.71□□□□□ -1.02
HSPG2P98160 SLC2A11-208ENST00000405847 730 ntTSL 2 BASIC8.71□□□□□ -1.02
HSPG2P98160 TISP43-202ENST00000409982 1039 ntAPPRIS P5 TSL 1 (best) BASIC8.71□□□□□ -1.02
HSPG2P98160 AC006987.1-201ENST00000413610 527 ntBASIC8.71□□□□□ -1.02
HSPG2P98160 GRPEL2P1-201ENST00000453145 339 ntBASIC8.71□□□□□ -1.02
HSPG2P98160 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC8.71□□□□□ -1.02
HSPG2P98160 KRT18P42-201ENST00000505048 1255 ntBASIC8.71□□□□□ -1.02
HSPG2P98160 IMMP1L-213ENST00000533642 314 ntTSL 2 BASIC8.71□□□□□ -1.02
HSPG2P98160 MT1X-202ENST00000562939 538 ntTSL 1 (best) BASIC8.71□□□□□ -1.02
HSPG2P98160 AC026461.1-201ENST00000567563 551 ntTSL 4 BASIC8.71□□□□□ -1.02
HSPG2P98160 LINC00514-203ENST00000573465 313 ntTSL 5 BASIC8.71□□□□□ -1.02
HSPG2P98160 MIR663AHG-218ENST00000598448 804 ntTSL 5 BASIC8.71□□□□□ -1.02
HSPG2P98160 GARS-210ENST00000627489 324 ntTSL 4 BASIC8.71□□□□□ -1.02
HSPG2P98160 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC8.71□□□□□ -1.02
HSPG2P98160 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC8.71□□□□□ -1.02
HSPG2P98160 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.02
HSPG2P98160 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.02
HSPG2P98160 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC8.71□□□□□ -1.02
HSPG2P98160 TTN-AS1-264ENST00000627564 1319 ntTSL 5 BASIC8.71□□□□□ -1.02
HSPG2P98160 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.02
HSPG2P98160 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.02
HSPG2P98160 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC8.71□□□□□ -1.02
HSPG2P98160 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC8.71□□□□□ -1.02
HSPG2P98160 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.02
HSPG2P98160 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC8.71□□□□□ -1.02
HSPG2P98160 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC8.71□□□□□ -1.02
HSPG2P98160 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC8.71□□□□□ -1.02
HSPG2P98160 AD000864.1-201ENST00000624076 2295 ntBASIC8.71□□□□□ -1.02
HSPG2P98160 AC023024.2-201ENST00000623561 1993 ntBASIC8.71□□□□□ -1.02
HSPG2P98160 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC8.71□□□□□ -1.02
HSPG2P98160 FCN2-202ENST00000350339 943 ntAPPRIS ALT2 TSL 5 BASIC8.7□□□□□ -1.02
HSPG2P98160 ZWINT-202ENST00000361148 807 ntAPPRIS ALT2 TSL 2 BASIC8.7□□□□□ -1.02
HSPG2P98160 MRPL23-203ENST00000397294 551 ntTSL 4 BASIC8.7□□□□□ -1.02
HSPG2P98160 NANOS3-202ENST00000397555 769 ntAPPRIS P1 TSL 5 BASIC8.7□□□□□ -1.02
HSPG2P98160 ZMIZ1-AS1-202ENST00000440151 814 ntTSL 3 BASIC8.7□□□□□ -1.02
HSPG2P98160 TAC3-209ENST00000458521 816 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
HSPG2P98160 DDX11L8-201ENST00000535849 366 ntBASIC8.7□□□□□ -1.02
HSPG2P98160 TTC39A-AS1-201ENST00000564479 812 ntTSL 3 BASIC8.7□□□□□ -1.02
HSPG2P98160 AC241585.2-202ENST00000621798 1015 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
HSPG2P98160 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
HSPG2P98160 CCT8L1P-201ENST00000465400 1674 ntBASIC8.7□□□□□ -1.02
HSPG2P98160 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC8.7□□□□□ -1.02
HSPG2P98160 AC012158.1-201ENST00000535684 1366 ntTSL 2 BASIC8.7□□□□□ -1.02
HSPG2P98160 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC8.7□□□□□ -1.02
HSPG2P98160 RN7SL832P-201ENST00000607781 1756 ntBASIC8.7□□□□□ -1.02
HSPG2P98160 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC8.7□□□□□ -1.02
HSPG2P98160 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
HSPG2P98160 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC8.7□□□□□ -1.02
HSPG2P98160 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC8.7□□□□□ -1.02
HSPG2P98160 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC8.7□□□□□ -1.02
HSPG2P98160 KCNE1-202ENST00000399284 666 ntAPPRIS P1 TSL 2 BASIC8.7□□□□□ -1.02
HSPG2P98160 GYG1-209ENST00000483267 801 ntTSL 2 BASIC8.7□□□□□ -1.02
HSPG2P98160 AC124242.1-203ENST00000517747 817 ntTSL 3 BASIC8.7□□□□□ -1.02
HSPG2P98160 AC008982.1-201ENST00000594769 963 ntAPPRIS P1 TSL 5 BASIC8.7□□□□□ -1.02
HSPG2P98160 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
HSPG2P98160 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC8.7□□□□□ -1.02
HSPG2P98160 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC8.7□□□□□ -1.02
HSPG2P98160 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC8.7□□□□□ -1.02
HSPG2P98160 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC8.7□□□□□ -1.02
HSPG2P98160 RRAGA-201ENST00000380527 1589 ntAPPRIS P1 BASIC8.7□□□□□ -1.02
HSPG2P98160 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC8.7□□□□□ -1.02
HSPG2P98160 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
HSPG2P98160 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC8.7□□□□□ -1.02
HSPG2P98160 AC002350.2-201ENST00000623894 1828 ntBASIC8.7□□□□□ -1.02
HSPG2P98160 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC8.7□□□□□ -1.02
HSPG2P98160 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
HSPG2P98160 DHRS7C-201ENST00000330255 1006 ntAPPRIS P3 TSL 1 (best) BASIC8.7□□□□□ -1.02
HSPG2P98160 KRTAP10-12-201ENST00000400365 873 ntAPPRIS P2 BASIC8.7□□□□□ -1.02
HSPG2P98160 CFL1P1-204ENST00000456375 424 ntTSL 3 BASIC8.7□□□□□ -1.02
HSPG2P98160 AP002495.1-205ENST00000529513 655 ntAPPRIS ALT2 TSL 3 BASIC8.7□□□□□ -1.02
HSPG2P98160 INCA1-204ENST00000576820 973 ntAPPRIS ALT2 TSL 1 (best) BASIC8.7□□□□□ -1.02
HSPG2P98160 ZNF850-201ENST00000589390 523 ntTSL 3 BASIC8.7□□□□□ -1.02
HSPG2P98160 PDLIM1P1-201ENST00000604187 969 ntBASIC8.7□□□□□ -1.02
HSPG2P98160 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.02
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms