Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC19.91■□□□□ 0.78
MSH6P52701 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
MSH6P52701 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
MSH6P52701 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
MSH6P52701 BID-213ENST00000615414 2236 ntTSL 5 BASIC19.91■□□□□ 0.78
MSH6P52701 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
MSH6P52701 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
MSH6P52701 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC19.91■□□□□ 0.78
MSH6P52701 MRPL35-201ENST00000254644 1061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.91■□□□□ 0.78
MSH6P52701 NDUFB6-202ENST00000366466 761 ntTSL 2 BASIC19.91■□□□□ 0.78
MSH6P52701 PGAM1P11-201ENST00000416729 680 ntBASIC19.91■□□□□ 0.78
MSH6P52701 SOD2-205ENST00000444946 917 ntTSL 2 BASIC19.91■□□□□ 0.78
MSH6P52701 AC010900.1-201ENST00000449849 1296 ntBASIC19.91■□□□□ 0.78
MSH6P52701 AP003351.1-201ENST00000522743 668 ntTSL 3 BASIC19.91■□□□□ 0.78
MSH6P52701 C11orf1-202ENST00000528125 534 ntTSL 2 BASIC19.91■□□□□ 0.78
MSH6P52701 URB1-AS1-201ENST00000534991 831 ntBASIC19.91■□□□□ 0.78
MSH6P52701 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
MSH6P52701 KLF17P1-201ENST00000547105 1126 ntBASIC19.91■□□□□ 0.78
MSH6P52701 CR383656.13-201ENST00000550928 563 ntTSL 3 BASIC19.91■□□□□ 0.78
MSH6P52701 AL512310.10-201ENST00000555580 563 ntTSL 3 BASIC19.91■□□□□ 0.78
MSH6P52701 IFI27L1-212ENST00000557218 413 ntTSL 3 BASIC19.91■□□□□ 0.78
MSH6P52701 AC009163.5-202ENST00000571737 466 ntTSL 3 BASIC19.91■□□□□ 0.78
MSH6P52701 AL353622.2-201ENST00000605846 425 ntBASIC19.91■□□□□ 0.78
MSH6P52701 AC090510.3-201ENST00000615831 821 ntBASIC19.91■□□□□ 0.78
MSH6P52701 AC020904.3-201ENST00000624199 442 ntBASIC19.91■□□□□ 0.78
MSH6P52701 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
MSH6P52701 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC19.91■□□□□ 0.78
MSH6P52701 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
MSH6P52701 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
MSH6P52701 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
MSH6P52701 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
MSH6P52701 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC19.91■□□□□ 0.78
MSH6P52701 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
MSH6P52701 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
MSH6P52701 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
MSH6P52701 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
MSH6P52701 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC19.9■□□□□ 0.78
MSH6P52701 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
MSH6P52701 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
MSH6P52701 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC19.9■□□□□ 0.78
MSH6P52701 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
MSH6P52701 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
MSH6P52701 LUC7L2-208ENST00000541170 1525 ntTSL 2 BASIC19.9■□□□□ 0.78
MSH6P52701 UBE2L5P-202ENST00000635918 1513 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
MSH6P52701 PKD1P1-201ENST00000458669 6805 ntBASIC19.9■□□□□ 0.78
MSH6P52701 AC105917.1-201ENST00000506637 2539 ntBASIC19.9■□□□□ 0.78
MSH6P52701 ATP5H-202ENST00000344546 553 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
MSH6P52701 AL080243.1-201ENST00000423293 1060 ntBASIC19.9■□□□□ 0.78
MSH6P52701 AC068057.1-201ENST00000453322 709 ntTSL 2 BASIC19.9■□□□□ 0.78
MSH6P52701 RN7SL788P-201ENST00000460504 316 ntBASIC19.9■□□□□ 0.78
MSH6P52701 AC015795.2-201ENST00000512720 575 ntTSL 3 BASIC19.9■□□□□ 0.78
MSH6P52701 AC087269.1-202ENST00000519147 400 ntTSL 3 BASIC19.9■□□□□ 0.78
MSH6P52701 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC19.9■□□□□ 0.78
MSH6P52701 DLK1-205ENST00000556051 469 ntTSL 2 BASIC19.9■□□□□ 0.78
MSH6P52701 CES1P2-201ENST00000566467 1242 ntBASIC19.9■□□□□ 0.78
MSH6P52701 AC011489.1-201ENST00000586744 690 ntTSL 3 BASIC19.9■□□□□ 0.78
MSH6P52701 ZNF737-204ENST00000596797 569 ntTSL 4 BASIC19.9■□□□□ 0.78
MSH6P52701 LINC01082-201ENST00000601250 441 ntTSL 2 BASIC19.9■□□□□ 0.78
MSH6P52701 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
MSH6P52701 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
MSH6P52701 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
MSH6P52701 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
MSH6P52701 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
MSH6P52701 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC19.9■□□□□ 0.78
MSH6P52701 AC067931.2-201ENST00000623655 2003 ntBASIC19.9■□□□□ 0.78
MSH6P52701 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC19.9■□□□□ 0.78
MSH6P52701 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
MSH6P52701 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
MSH6P52701 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
MSH6P52701 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC19.9■□□□□ 0.78
MSH6P52701 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
MSH6P52701 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC19.9■□□□□ 0.78
MSH6P52701 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC19.89■□□□□ 0.78
MSH6P52701 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
MSH6P52701 LINC01101-201ENST00000622953 1884 ntBASIC19.89■□□□□ 0.78
MSH6P52701 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
MSH6P52701 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
MSH6P52701 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
MSH6P52701 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
MSH6P52701 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
MSH6P52701 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC19.89■□□□□ 0.77
MSH6P52701 EZH2-202ENST00000350995 2477 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.77
MSH6P52701 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
MSH6P52701 SERF1B-204ENST00000506542 1666 ntTSL 3 BASIC19.89■□□□□ 0.77
MSH6P52701 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
MSH6P52701 RPS9-202ENST00000391751 510 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
MSH6P52701 CDCA4P4-201ENST00000435216 680 ntBASIC19.89■□□□□ 0.77
MSH6P52701 IFI35-204ENST00000438323 1232 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
MSH6P52701 PLSCR1-202ENST00000448787 996 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
MSH6P52701 AC087203.1-201ENST00000532111 1181 ntBASIC19.89■□□□□ 0.77
MSH6P52701 KXD1-211ENST00000599319 707 ntAPPRIS P1 TSL 3 BASIC19.89■□□□□ 0.77
MSH6P52701 AC080013.5-201ENST00000607044 679 ntBASIC19.89■□□□□ 0.77
MSH6P52701 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
MSH6P52701 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC19.89■□□□□ 0.77
MSH6P52701 KHSRPP1-201ENST00000427983 1768 ntBASIC19.89■□□□□ 0.77
MSH6P52701 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
MSH6P52701 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
MSH6P52701 AL365181.1-201ENST00000564032 1828 ntBASIC19.89■□□□□ 0.77
MSH6P52701 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
MSH6P52701 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 86.3 ms