Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL18A1P39060 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL18A1P39060 POLR2G-201ENST00000301788 827 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL18A1P39060 U3.5-201ENST00000363448 216 ntBASIC18.68■□□□□ 0.58
COL18A1P39060 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL18A1P39060 TPM2-204ENST00000378300 1771 ntTSL 3 BASIC18.68■□□□□ 0.58
COL18A1P39060 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL18A1P39060 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL18A1P39060 NIFK-AS1-203ENST00000419902 1316 ntTSL 2 BASIC18.68■□□□□ 0.58
COL18A1P39060 AC136604.1-202ENST00000425471 771 ntBASIC18.68■□□□□ 0.58
COL18A1P39060 OST4-201ENST00000429985 559 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
COL18A1P39060 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL18A1P39060 ZMIZ1-AS1-202ENST00000440151 814 ntTSL 3 BASIC18.68■□□□□ 0.58
COL18A1P39060 KRT18P15-201ENST00000458108 1291 ntBASIC18.68■□□□□ 0.58
COL18A1P39060 CD300LF-206ENST00000464910 996 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL18A1P39060 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL18A1P39060 CD44-224ENST00000526669 870 ntTSL 5 BASIC18.68■□□□□ 0.58
COL18A1P39060 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC18.68■□□□□ 0.58
COL18A1P39060 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC18.68■□□□□ 0.58
COL18A1P39060 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL18A1P39060 MARS-233ENST00000628866 2583 ntTSL 5 BASIC18.68■□□□□ 0.58
COL18A1P39060 AC106774.7-201ENST00000638408 597 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
COL18A1P39060 AC106774.6-201ENST00000638483 597 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
COL18A1P39060 AC233724.20-201ENST00000638842 597 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
COL18A1P39060 AC233724.19-201ENST00000639969 597 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
COL18A1P39060 AC106774.5-201ENST00000640558 597 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
COL18A1P39060 AC233724.18-201ENST00000640803 597 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
COL18A1P39060 AC233724.21-201ENST00000640846 597 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
COL18A1P39060 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL18A1P39060 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL18A1P39060 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL18A1P39060 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL18A1P39060 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC18.68■□□□□ 0.58
COL18A1P39060 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL18A1P39060 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC18.68■□□□□ 0.58
COL18A1P39060 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL18A1P39060 AL139158.3-201ENST00000641212 1562 ntBASIC18.68■□□□□ 0.58
COL18A1P39060 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL18A1P39060 MRPL18-201ENST00000367034 978 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL18A1P39060 COLEC11-204ENST00000402794 1134 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL18A1P39060 MOCS1-207ENST00000432280 1071 ntTSL 5 BASIC18.68■□□□□ 0.58
COL18A1P39060 RPL15-208ENST00000435882 1063 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
COL18A1P39060 RN7SL351P-201ENST00000469306 248 ntBASIC18.68■□□□□ 0.58
COL18A1P39060 AC025171.3-201ENST00000509036 472 ntTSL 2 BASIC18.68■□□□□ 0.58
COL18A1P39060 LINC02252-201ENST00000565706 487 ntTSL 3 BASIC18.68■□□□□ 0.58
COL18A1P39060 ARL17B-203ENST00000570618 1140 ntTSL 2 BASIC18.68■□□□□ 0.58
COL18A1P39060 RPL18A-203ENST00000599870 1084 ntTSL 2 BASIC18.68■□□□□ 0.58
COL18A1P39060 PRMT1P1-201ENST00000604252 1009 ntBASIC18.68■□□□□ 0.58
COL18A1P39060 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL18A1P39060 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC18.68■□□□□ 0.58
COL18A1P39060 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL18A1P39060 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC18.67■□□□□ 0.58
COL18A1P39060 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC18.67■□□□□ 0.58
COL18A1P39060 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL18A1P39060 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL18A1P39060 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC18.67■□□□□ 0.58
COL18A1P39060 AC073347.1-201ENST00000421633 2643 ntBASIC18.67■□□□□ 0.58
COL18A1P39060 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC18.67■□□□□ 0.58
COL18A1P39060 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC18.67■□□□□ 0.58
COL18A1P39060 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL18A1P39060 TMEM9B-202ENST00000525069 1433 ntTSL 2 BASIC18.67■□□□□ 0.58
COL18A1P39060 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC18.67■□□□□ 0.58
COL18A1P39060 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
COL18A1P39060 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL18A1P39060 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL18A1P39060 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
COL18A1P39060 MC3R-201ENST00000243911 1084 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
COL18A1P39060 GGTLC4P-201ENST00000402176 664 ntBASIC18.67■□□□□ 0.58
COL18A1P39060 EFNA4-203ENST00000427683 1052 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
COL18A1P39060 BX248123.1-201ENST00000429070 606 ntTSL 3 BASIC18.67■□□□□ 0.58
COL18A1P39060 AC113347.2-201ENST00000512350 279 ntBASIC18.67■□□□□ 0.58
COL18A1P39060 VEGFA-219ENST00000518824 606 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL18A1P39060 AC074050.2-201ENST00000563338 538 ntTSL 3 BASIC18.67■□□□□ 0.58
COL18A1P39060 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL18A1P39060 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
COL18A1P39060 PES1P2-201ENST00000449745 1735 ntBASIC18.67■□□□□ 0.58
COL18A1P39060 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL18A1P39060 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL18A1P39060 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
COL18A1P39060 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL18A1P39060 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL18A1P39060 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC18.66■□□□□ 0.58
COL18A1P39060 DAD1-201ENST00000250498 731 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL18A1P39060 TNNT2-207ENST00000367322 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL18A1P39060 TSC22D3-202ENST00000372382 1216 ntTSL 3 BASIC18.66■□□□□ 0.58
COL18A1P39060 SOD2-205ENST00000444946 917 ntTSL 2 BASIC18.66■□□□□ 0.58
COL18A1P39060 SMUG1-221ENST00000514196 553 ntTSL 4 BASIC18.66■□□□□ 0.58
COL18A1P39060 CASP3-205ENST00000517513 964 ntTSL 5 BASIC18.66■□□□□ 0.58
COL18A1P39060 AC087620.1-201ENST00000520037 447 ntTSL 3 BASIC18.66■□□□□ 0.58
COL18A1P39060 PTPN20CP-201ENST00000614090 920 ntBASIC18.66■□□□□ 0.58
COL18A1P39060 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC18.66■□□□□ 0.58
COL18A1P39060 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC18.66■□□□□ 0.58
COL18A1P39060 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL18A1P39060 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL18A1P39060 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC18.66■□□□□ 0.58
COL18A1P39060 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL18A1P39060 INSC-205ENST00000525218 1576 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL18A1P39060 PCGF2-203ENST00000616129 1534 ntTSL 5 BASIC18.66■□□□□ 0.58
COL18A1P39060 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL18A1P39060 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms