Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PTPN4P29074 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PTPN4P29074 ATRIP-204ENST00000412052 2721 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PTPN4P29074 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC14.86□□□□□ -0.03
PTPN4P29074 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PTPN4P29074 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC14.86□□□□□ -0.03
PTPN4P29074 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PTPN4P29074 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
PTPN4P29074 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PTPN4P29074 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PTPN4P29074 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
PTPN4P29074 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC14.86□□□□□ -0.03
PTPN4P29074 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC14.86□□□□□ -0.03
PTPN4P29074 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC14.86□□□□□ -0.03
PTPN4P29074 FAM86LP-201ENST00000478302 853 ntBASIC14.86□□□□□ -0.03
PTPN4P29074 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC14.86□□□□□ -0.03
PTPN4P29074 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC14.86□□□□□ -0.03
PTPN4P29074 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PTPN4P29074 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC14.86□□□□□ -0.03
PTPN4P29074 PFAS-212ENST00000625942 396 ntTSL 5 BASIC14.86□□□□□ -0.03
PTPN4P29074 SCNN1A-201ENST00000228916 3135 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
PTPN4P29074 CLCNKA-202ENST00000375692 2581 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PTPN4P29074 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC14.86□□□□□ -0.03
PTPN4P29074 SNAP91-215ENST00000521743 4263 ntAPPRIS P2 TSL 5 BASIC14.86□□□□□ -0.03
PTPN4P29074 VPS52-212ENST00000445902 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PTPN4P29074 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
PTPN4P29074 INE2-201ENST00000630399 1874 ntBASIC14.86□□□□□ -0.03
PTPN4P29074 NFATC1-205ENST00000427363 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
PTPN4P29074 DNM1-212ENST00000627543 4734 ntAPPRIS ALT1 TSL 5 BASIC14.86□□□□□ -0.03
PTPN4P29074 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
PTPN4P29074 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PTPN4P29074 RGS9-210ENST00000635833 2308 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
PTPN4P29074 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
PTPN4P29074 RERG-209ENST00000546331 1383 ntTSL 2 BASIC14.85□□□□□ -0.03
PTPN4P29074 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
PTPN4P29074 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC14.85□□□□□ -0.03
PTPN4P29074 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PTPN4P29074 ZFP82-201ENST00000392161 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PTPN4P29074 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PTPN4P29074 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC14.85□□□□□ -0.03
PTPN4P29074 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PTPN4P29074 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
PTPN4P29074 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
PTPN4P29074 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
PTPN4P29074 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
PTPN4P29074 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
PTPN4P29074 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PTPN4P29074 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
PTPN4P29074 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PTPN4P29074 ADCY3-202ENST00000405392 4397 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PTPN4P29074 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PTPN4P29074 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PTPN4P29074 ADCY8-202ENST00000377928 3363 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PTPN4P29074 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
PTPN4P29074 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC14.85□□□□□ -0.03
PTPN4P29074 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC14.85□□□□□ -0.03
PTPN4P29074 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PTPN4P29074 TOMM22P5-201ENST00000416399 439 ntBASIC14.85□□□□□ -0.03
PTPN4P29074 FAM200B-201ENST00000422728 2962 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PTPN4P29074 USP40-206ENST00000443711 628 ntTSL 2 BASIC14.85□□□□□ -0.03
PTPN4P29074 NME4-207ENST00000450036 985 ntTSL 3 BASIC14.85□□□□□ -0.03
PTPN4P29074 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC14.85□□□□□ -0.03
PTPN4P29074 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
PTPN4P29074 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC14.85□□□□□ -0.03
PTPN4P29074 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
PTPN4P29074 HNRNPA1P13-201ENST00000510646 963 ntBASIC14.85□□□□□ -0.03
PTPN4P29074 ABLIM2-213ENST00000514025 2974 ntTSL 2 BASIC14.85□□□□□ -0.03
PTPN4P29074 AC022447.6-201ENST00000515522 438 ntBASIC14.85□□□□□ -0.03
PTPN4P29074 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC14.85□□□□□ -0.03
PTPN4P29074 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC14.85□□□□□ -0.03
PTPN4P29074 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
PTPN4P29074 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC14.85□□□□□ -0.03
PTPN4P29074 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC14.85□□□□□ -0.03
PTPN4P29074 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
PTPN4P29074 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC14.85□□□□□ -0.03
PTPN4P29074 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC14.85□□□□□ -0.03
PTPN4P29074 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC14.85□□□□□ -0.03
PTPN4P29074 AC133552.6-201ENST00000613406 534 ntBASIC14.85□□□□□ -0.03
PTPN4P29074 CU634019.7-201ENST00000624153 1185 ntBASIC14.85□□□□□ -0.03
PTPN4P29074 FP236241.2-201ENST00000624906 1185 ntBASIC14.85□□□□□ -0.03
PTPN4P29074 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
PTPN4P29074 ABBA01031660.1-201ENST00000635219 756 ntBASIC14.85□□□□□ -0.03
PTPN4P29074 TOLLIP-202ENST00000317204 3617 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PTPN4P29074 RAPGEF3-218ENST00000548919 2776 ntTSL 2 BASIC14.85□□□□□ -0.03
PTPN4P29074 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PTPN4P29074 Z82170.1-201ENST00000625081 3192 ntBASIC14.85□□□□□ -0.03
PTPN4P29074 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
PTPN4P29074 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC14.85□□□□□ -0.03
PTPN4P29074 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
PTPN4P29074 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC14.84□□□□□ -0.03
PTPN4P29074 BCAR1-208ENST00000542031 2846 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
PTPN4P29074 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC14.84□□□□□ -0.03
PTPN4P29074 MAN2B1-203ENST00000456935 3184 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
PTPN4P29074 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC14.84□□□□□ -0.03
PTPN4P29074 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PTPN4P29074 AL354702.1-201ENST00000442006 1960 ntBASIC14.84□□□□□ -0.03
PTPN4P29074 AC113189.2-201ENST00000575310 1975 ntTSL 2 BASIC14.84□□□□□ -0.03
PTPN4P29074 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
PTPN4P29074 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
PTPN4P29074 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms