Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 OR4S1-201ENST00000319988 930 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
COL5A1P20908 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL5A1P20908 WASIR1-201ENST00000399966 1054 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
COL5A1P20908 AP001057.1-201ENST00000437557 799 ntTSL 5 BASIC13.73□□□□□ -0.21
COL5A1P20908 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC13.73□□□□□ -0.21
COL5A1P20908 TIMM17B-204ENST00000465150 964 ntTSL 2 BASIC13.73□□□□□ -0.21
COL5A1P20908 TGFB3-204ENST00000556285 1280 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
COL5A1P20908 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL5A1P20908 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
COL5A1P20908 CCL5-201ENST00000603197 1365 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL5A1P20908 ASGR1-209ENST00000619926 1384 ntTSL 5 BASIC13.73□□□□□ -0.21
COL5A1P20908 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL5A1P20908 MPI-203ENST00000535694 1523 ntTSL 2 BASIC13.73□□□□□ -0.21
COL5A1P20908 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC13.73□□□□□ -0.21
COL5A1P20908 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL5A1P20908 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL5A1P20908 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC13.72□□□□□ -0.21
COL5A1P20908 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL5A1P20908 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
COL5A1P20908 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC13.72□□□□□ -0.21
COL5A1P20908 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC13.72□□□□□ -0.21
COL5A1P20908 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC13.72□□□□□ -0.21
COL5A1P20908 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
COL5A1P20908 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC13.72□□□□□ -0.21
COL5A1P20908 BCL2-203ENST00000589955 5011 ntBASIC13.72□□□□□ -0.21
COL5A1P20908 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL5A1P20908 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL5A1P20908 C11orf49-203ENST00000378618 1166 ntTSL 5 BASIC13.72□□□□□ -0.21
COL5A1P20908 EIF4E2-205ENST00000409394 604 ntTSL 3 BASIC13.72□□□□□ -0.21
COL5A1P20908 AL451105.2-201ENST00000413763 1234 ntTSL 5 BASIC13.72□□□□□ -0.21
COL5A1P20908 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC13.72□□□□□ -0.21
COL5A1P20908 AL451000.1-201ENST00000451300 1186 ntBASIC13.72□□□□□ -0.21
COL5A1P20908 IGKV1D-43-201ENST00000468879 532 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
COL5A1P20908 AC025186.1-201ENST00000478174 870 ntBASIC13.72□□□□□ -0.21
COL5A1P20908 PFN2-212ENST00000490975 858 ntTSL 4 BASIC13.72□□□□□ -0.21
COL5A1P20908 AC083801.1-201ENST00000491689 358 ntBASIC13.72□□□□□ -0.21
COL5A1P20908 AC011383.1-201ENST00000517474 617 ntTSL 3 BASIC13.72□□□□□ -0.21
COL5A1P20908 MAX-218ENST00000557746 571 ntTSL 4 BASIC13.72□□□□□ -0.21
COL5A1P20908 AP005212.2-201ENST00000584979 510 ntBASIC13.72□□□□□ -0.21
COL5A1P20908 AC010632.2-201ENST00000588369 1224 ntBASIC13.72□□□□□ -0.21
COL5A1P20908 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL5A1P20908 MSANTD2P1-201ENST00000445341 1368 ntBASIC13.72□□□□□ -0.21
COL5A1P20908 CRYM-202ENST00000543948 1400 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
COL5A1P20908 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL5A1P20908 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL5A1P20908 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC13.72□□□□□ -0.21
COL5A1P20908 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC13.72□□□□□ -0.21
COL5A1P20908 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
COL5A1P20908 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL5A1P20908 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL5A1P20908 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
COL5A1P20908 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL5A1P20908 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL5A1P20908 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC13.72□□□□□ -0.21
COL5A1P20908 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC13.72□□□□□ -0.21
COL5A1P20908 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL5A1P20908 RBFOX3-203ENST00000580155 1519 ntAPPRIS P2 TSL 2 BASIC13.71□□□□□ -0.21
COL5A1P20908 SHANK2-202ENST00000357171 1373 ntTSL 5 BASIC13.71□□□□□ -0.21
COL5A1P20908 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC13.71□□□□□ -0.21
COL5A1P20908 C12orf65-204ENST00000429587 1326 ntAPPRIS P2 TSL 2 BASIC13.71□□□□□ -0.21
COL5A1P20908 PGAM2-201ENST00000297283 857 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL5A1P20908 DIO1-203ENST00000388876 606 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
COL5A1P20908 ACTBP7-201ENST00000418351 1124 ntBASIC13.71□□□□□ -0.21
COL5A1P20908 RPL3P5-201ENST00000441645 1232 ntBASIC13.71□□□□□ -0.21
COL5A1P20908 DARS-AS1-204ENST00000444406 442 ntTSL 2 BASIC13.71□□□□□ -0.21
COL5A1P20908 AC008026.2-201ENST00000495438 348 ntBASIC13.71□□□□□ -0.21
COL5A1P20908 CISD2-202ENST00000503643 808 ntTSL 2 BASIC13.71□□□□□ -0.21
COL5A1P20908 DIO1-204ENST00000524406 626 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
COL5A1P20908 IMMP1L-202ENST00000526776 469 ntTSL 3 BASIC13.71□□□□□ -0.21
COL5A1P20908 BANF1-205ENST00000527348 670 ntAPPRIS P1 TSL 3 BASIC13.71□□□□□ -0.21
COL5A1P20908 DIO1-213ENST00000532493 406 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
COL5A1P20908 VENTXP3-201ENST00000546480 773 ntBASIC13.71□□□□□ -0.21
COL5A1P20908 AC009779.3-204ENST00000549424 367 ntTSL 3 BASIC13.71□□□□□ -0.21
COL5A1P20908 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC13.71□□□□□ -0.21
COL5A1P20908 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC13.71□□□□□ -0.21
COL5A1P20908 CYP4F36P-201ENST00000589193 186 ntBASIC13.71□□□□□ -0.21
COL5A1P20908 AC104506.1-201ENST00000609247 429 ntBASIC13.71□□□□□ -0.21
COL5A1P20908 HPX-213ENST00000615166 826 ntTSL 5 BASIC13.71□□□□□ -0.21
COL5A1P20908 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
COL5A1P20908 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL5A1P20908 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC13.71□□□□□ -0.21
COL5A1P20908 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL5A1P20908 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL5A1P20908 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
COL5A1P20908 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL5A1P20908 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC13.71□□□□□ -0.21
COL5A1P20908 USP35-204ENST00000530267 2419 ntTSL 2 BASIC13.71□□□□□ -0.21
COL5A1P20908 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL5A1P20908 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL5A1P20908 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC13.71□□□□□ -0.22
COL5A1P20908 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
COL5A1P20908 XPNPEP2-201ENST00000371105 912 ntTSL 2 BASIC13.71□□□□□ -0.22
COL5A1P20908 GEMIN8P4-201ENST00000380526 729 ntBASIC13.71□□□□□ -0.22
COL5A1P20908 RPL3P2-204ENST00000413027 1203 ntBASIC13.71□□□□□ -0.22
COL5A1P20908 AL354892.2-201ENST00000413088 403 ntTSL 5 BASIC13.71□□□□□ -0.22
COL5A1P20908 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
COL5A1P20908 AADACL2-AS1-202ENST00000483843 628 ntTSL 5 BASIC13.71□□□□□ -0.22
COL5A1P20908 C21orf62-204ENST00000490358 1155 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
COL5A1P20908 LINC02063-201ENST00000503415 566 ntTSL 4 BASIC13.71□□□□□ -0.22
COL5A1P20908 AC026191.1-204ENST00000517846 608 ntTSL 3 BASIC13.71□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms