Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 MIR33B-201ENST00000385104 96 ntBASIC17.22■□□□□ 0.35
HLA-DOAP06340 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC17.22■□□□□ 0.35
HLA-DOAP06340 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC17.22■□□□□ 0.35
HLA-DOAP06340 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC17.22■□□□□ 0.35
HLA-DOAP06340 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC17.22■□□□□ 0.35
HLA-DOAP06340 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC17.22■□□□□ 0.35
HLA-DOAP06340 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC17.22■□□□□ 0.35
HLA-DOAP06340 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC17.22■□□□□ 0.35
HLA-DOAP06340 PHBP15-201ENST00000574228 665 ntBASIC17.22■□□□□ 0.35
HLA-DOAP06340 MIR4706-201ENST00000582134 82 ntBASIC17.22■□□□□ 0.35
HLA-DOAP06340 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC17.22■□□□□ 0.35
HLA-DOAP06340 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC17.22■□□□□ 0.35
HLA-DOAP06340 HPN-206ENST00000597419 1212 ntTSL 5 BASIC17.22■□□□□ 0.35
HLA-DOAP06340 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HLA-DOAP06340 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
HLA-DOAP06340 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC17.22■□□□□ 0.35
HLA-DOAP06340 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
HLA-DOAP06340 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HLA-DOAP06340 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC17.22■□□□□ 0.35
HLA-DOAP06340 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
HLA-DOAP06340 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HLA-DOAP06340 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
HLA-DOAP06340 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HLA-DOAP06340 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HLA-DOAP06340 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HLA-DOAP06340 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
HLA-DOAP06340 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC17.22■□□□□ 0.35
HLA-DOAP06340 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HLA-DOAP06340 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HLA-DOAP06340 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HLA-DOAP06340 AC006480.2-201ENST00000609770 1337 ntBASIC17.21■□□□□ 0.35
HLA-DOAP06340 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HLA-DOAP06340 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC17.21■□□□□ 0.35
HLA-DOAP06340 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HLA-DOAP06340 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC17.21■□□□□ 0.35
HLA-DOAP06340 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC17.21■□□□□ 0.35
HLA-DOAP06340 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HLA-DOAP06340 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HLA-DOAP06340 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HLA-DOAP06340 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC17.21■□□□□ 0.35
HLA-DOAP06340 NID2-208ENST00000617139 3827 ntTSL 5 BASIC17.21■□□□□ 0.35
HLA-DOAP06340 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HLA-DOAP06340 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HLA-DOAP06340 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
HLA-DOAP06340 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC17.21■□□□□ 0.35
HLA-DOAP06340 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
HLA-DOAP06340 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HLA-DOAP06340 CAP2P1-201ENST00000557743 1390 ntBASIC17.21■□□□□ 0.35
HLA-DOAP06340 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HLA-DOAP06340 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HLA-DOAP06340 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HLA-DOAP06340 AL627231.1-201ENST00000394467 1125 ntBASIC17.21■□□□□ 0.35
HLA-DOAP06340 FXNP2-201ENST00000411625 547 ntBASIC17.21■□□□□ 0.35
HLA-DOAP06340 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC17.21■□□□□ 0.35
HLA-DOAP06340 RN7SL530P-201ENST00000485097 298 ntBASIC17.21■□□□□ 0.35
HLA-DOAP06340 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HLA-DOAP06340 CFL1-214ENST00000534769 758 ntTSL 2 BASIC17.21■□□□□ 0.35
HLA-DOAP06340 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC17.21■□□□□ 0.35
HLA-DOAP06340 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
HLA-DOAP06340 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC17.21■□□□□ 0.35
HLA-DOAP06340 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC17.21■□□□□ 0.35
HLA-DOAP06340 AC103691.2-201ENST00000618824 433 ntBASIC17.21■□□□□ 0.35
HLA-DOAP06340 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HLA-DOAP06340 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
HLA-DOAP06340 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HLA-DOAP06340 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
HLA-DOAP06340 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HLA-DOAP06340 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HLA-DOAP06340 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
HLA-DOAP06340 POR-201ENST00000394893 2532 ntTSL 5 BASIC17.21■□□□□ 0.35
HLA-DOAP06340 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC17.21■□□□□ 0.35
HLA-DOAP06340 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HLA-DOAP06340 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HLA-DOAP06340 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC17.21■□□□□ 0.35
HLA-DOAP06340 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
HLA-DOAP06340 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
HLA-DOAP06340 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HLA-DOAP06340 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
HLA-DOAP06340 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HLA-DOAP06340 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HLA-DOAP06340 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC17.21■□□□□ 0.34
HLA-DOAP06340 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC17.21■□□□□ 0.34
HLA-DOAP06340 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.34
HLA-DOAP06340 KRT18P9-201ENST00000604826 1300 ntBASIC17.21■□□□□ 0.34
HLA-DOAP06340 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC17.2■□□□□ 0.34
HLA-DOAP06340 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
HLA-DOAP06340 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC17.2■□□□□ 0.34
HLA-DOAP06340 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HLA-DOAP06340 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HLA-DOAP06340 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HLA-DOAP06340 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
HLA-DOAP06340 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC17.2■□□□□ 0.34
HLA-DOAP06340 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HLA-DOAP06340 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
HLA-DOAP06340 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC17.2■□□□□ 0.34
HLA-DOAP06340 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC17.2■□□□□ 0.34
HLA-DOAP06340 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HLA-DOAP06340 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HLA-DOAP06340 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
HLA-DOAP06340 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms