Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 VASH2-202ENST00000366964 2960 ntTSL 5 BASIC14.12□□□□□ -0.15
PDLIM1O00151 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC14.12□□□□□ -0.15
PDLIM1O00151 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
PDLIM1O00151 RREB1-210ENST00000611109 3563 ntTSL 5 BASIC14.12□□□□□ -0.15
PDLIM1O00151 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
PDLIM1O00151 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
PDLIM1O00151 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
PDLIM1O00151 CCDC57-202ENST00000389641 3000 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
PDLIM1O00151 CCDC57-206ENST00000392347 3000 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
PDLIM1O00151 TMEM63B-202ENST00000323267 3198 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
PDLIM1O00151 RRAGD-201ENST00000359203 4042 ntTSL 2 BASIC14.12□□□□□ -0.15
PDLIM1O00151 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
PDLIM1O00151 AC009093.1-201ENST00000566070 2099 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
PDLIM1O00151 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC14.11□□□□□ -0.15
PDLIM1O00151 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
PDLIM1O00151 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC14.11□□□□□ -0.15
PDLIM1O00151 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
PDLIM1O00151 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
PDLIM1O00151 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
PDLIM1O00151 TMEM201-201ENST00000340305 3851 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
PDLIM1O00151 TSEN2-202ENST00000402228 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
PDLIM1O00151 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
PDLIM1O00151 VENTXP1-201ENST00000569334 2716 ntBASIC14.11□□□□□ -0.15
PDLIM1O00151 CARHSP1-202ENST00000396593 3026 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
PDLIM1O00151 ARMC5-201ENST00000268314 3612 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
PDLIM1O00151 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
PDLIM1O00151 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC14.11□□□□□ -0.15
PDLIM1O00151 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC14.11□□□□□ -0.15
PDLIM1O00151 CREB3L4-204ENST00000368603 1557 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
PDLIM1O00151 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC14.11□□□□□ -0.15
PDLIM1O00151 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
PDLIM1O00151 AAAS-202ENST00000394384 1703 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
PDLIM1O00151 FO393414.2-201ENST00000405153 598 ntBASIC14.11□□□□□ -0.15
PDLIM1O00151 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
PDLIM1O00151 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
PDLIM1O00151 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC14.11□□□□□ -0.15
PDLIM1O00151 AC009477.1-201ENST00000452936 217 ntBASIC14.11□□□□□ -0.15
PDLIM1O00151 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC14.11□□□□□ -0.15
PDLIM1O00151 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC14.11□□□□□ -0.15
PDLIM1O00151 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
PDLIM1O00151 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC14.11□□□□□ -0.15
PDLIM1O00151 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC14.11□□□□□ -0.15
PDLIM1O00151 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
PDLIM1O00151 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
PDLIM1O00151 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC14.11□□□□□ -0.15
PDLIM1O00151 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC14.11□□□□□ -0.15
PDLIM1O00151 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC14.11□□□□□ -0.15
PDLIM1O00151 AC023794.5-201ENST00000564380 2157 ntBASIC14.11□□□□□ -0.15
PDLIM1O00151 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC14.11□□□□□ -0.15
PDLIM1O00151 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC14.11□□□□□ -0.15
PDLIM1O00151 AL645728.2-202ENST00000641679 227 ntBASIC14.11□□□□□ -0.15
PDLIM1O00151 PDK2-203ENST00000503176 3440 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
PDLIM1O00151 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
PDLIM1O00151 GAP43-202ENST00000393780 1901 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
PDLIM1O00151 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC14.11□□□□□ -0.15
PDLIM1O00151 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
PDLIM1O00151 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC14.11□□□□□ -0.15
PDLIM1O00151 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC14.11□□□□□ -0.15
PDLIM1O00151 AC138969.2-201ENST00000532739 9932 ntBASIC14.11□□□□□ -0.15
PDLIM1O00151 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC14.11□□□□□ -0.15
PDLIM1O00151 HJURP-207ENST00000441687 2934 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
PDLIM1O00151 AGBL2-205ENST00000528244 2929 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
PDLIM1O00151 CTBP1-AS-201ENST00000625256 3886 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
PDLIM1O00151 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
PDLIM1O00151 RIPOR3-202ENST00000327979 4377 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
PDLIM1O00151 TK1-203ENST00000588734 1681 ntTSL 2 BASIC14.1□□□□□ -0.15
PDLIM1O00151 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
PDLIM1O00151 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC14.1□□□□□ -0.15
PDLIM1O00151 AC018665.1-201ENST00000622927 1362 ntBASIC14.1□□□□□ -0.15
PDLIM1O00151 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDLIM1O00151 SLC5A4-201ENST00000266086 2030 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDLIM1O00151 ABCG8-201ENST00000272286 2665 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDLIM1O00151 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDLIM1O00151 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDLIM1O00151 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
PDLIM1O00151 RAB37-205ENST00000392614 2704 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
PDLIM1O00151 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDLIM1O00151 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDLIM1O00151 FGFRL1-201ENST00000264748 3100 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDLIM1O00151 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDLIM1O00151 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDLIM1O00151 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC14.1□□□□□ -0.15
PDLIM1O00151 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
PDLIM1O00151 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDLIM1O00151 CENPM-206ENST00000407253 818 ntTSL 2 BASIC14.1□□□□□ -0.15
PDLIM1O00151 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC14.1□□□□□ -0.15
PDLIM1O00151 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC14.1□□□□□ -0.15
PDLIM1O00151 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC14.1□□□□□ -0.15
PDLIM1O00151 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC14.1□□□□□ -0.15
PDLIM1O00151 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
PDLIM1O00151 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC14.1□□□□□ -0.15
PDLIM1O00151 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDLIM1O00151 AJ011932.1-201ENST00000621707 465 ntBASIC14.1□□□□□ -0.15
PDLIM1O00151 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
PDLIM1O00151 AL033527.5-202ENST00000641632 1098 ntBASIC14.1□□□□□ -0.15
PDLIM1O00151 TMEM123-201ENST00000361236 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDLIM1O00151 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDLIM1O00151 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
PDLIM1O00151 CFAP74-209ENST00000493964 5247 ntAPPRIS P5 TSL 5 BASIC14.1□□□□□ -0.15
PDLIM1O00151 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 90.6 ms